Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1962 ATGATGCGGTTTGTGATGTCTTCAAGCTCCAAACGTGTGTCTAAGTGCTTCATTTTTGTGTTCCTGGCTTCCCTACACTTTGGATCCAACGCTCAACTCTTACCACAAGATGAAGTGAAATTGCTACAAGCAATATCAGACAAGGTAGAGAACCTGAATTGGAAAGTTACACAACGTTCTTGCAACGGGGATAGAGGATTTGATAACAGGAACATTTCAAGGGATAATAAGTCTCAAATCATAAGGAATGTCACGTGTGATTGCTCTTTCAACAATAACACTACTTGCCATGTGACAGCAATTGCGCTCAAGGGTCTCAATATATCTGGACCTATACCCGATGAATTTGGAAATTTAACTCGACTAGAAATACTTGATCTCACTTGGAATAATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTCTCATCAGTTGTCAATCTGTCACTTTTGGGAAATCGACTTACTGGTTCAATTCCCTCAGAAATTGGTGACATGGCTAGTCTGCAAGAACTGAATTTGGAAGATAATCAACTTGAGGGACCTCTTCCCCAGAGCCTTGGAAAAATGAGCAACTTGCTGAGATTACTTCTTTCTGCAAATAATTTCACAGGGATAATACCAGATACATATGGAAATCTAAAGAATCTCACTCAGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAAATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGATTGGATTTGCAGGGCACATCCTTGGACGGCCCAATTCCTTCTGTCATATCTTACTTGACAAATTTGACAGAATTGAGGATATCTGATTTGAAGGGACCAACTATGACATTTCCTAATCTGAAGAATTTGAAACTTTTGCTAAGACTGGAATTGAGGAATTGCTTAATAACTGGTCCCATTCCAAACTACATTGGAGAAATAAAAAGTTTGAAAACCATAGATCTGAGCTCCAACATGTTAACAGGTTCAATCCCAGATTCATTTCAGGATTTGGGAAATCTAAATTACTTGTTTCTGACTAACAATTCTCTAAGTGGACCAATTCCTGATTGGATACTGAGCATAAACCAGCAAATTGATTTATCTTTGAACAATTTCACAAAGACTTCAGCAAATAATTGCCAAAGGCCGGATCTGAACTTAGCTTCAAGCCTCTCTCGCACAGCAAGCACTTCAATACTTTGTTTGAAGATGGGCCAACCTTGTTCAGGAAAACCCCTGTTTCATTCACTGTTCATAAACTGTGGAGGACCTGAAACAAAGTTTGAGGGCAATGAATATGAAGCTGACCTCAGTCCATATGGCATTTCAAACTATGTTCCTGGTAATAGTGGCAAATGGGCTTATAGCAGCACTGGAGTATATCTAGGAAATGCAAAAGCTGATTATATAGCAACAAATCAGCTATCTTTGGATATTAATGGCCCTGATTACTACCACACAGCCCGCATAGCTCCTCTGTATCTTAATTACTATGGCCTTTGTATGCTGAACGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAGCATTCTCTGATGACCAATCATATTGCAACCATGGAAAGCGTGTATTCGATGTATCAATTCAAGGTTTTAAATATCTGAAAGATTTTAACATTGCGAAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAGGGAGTTTAATGTTAATGTTACAGAAAGCACCTTGGAAATCCACTTATCCTGGGCAGGAAAAGGAACTAATGCCATTCCTATAATAGGTGTATATGGACCTCTCATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTTATGCACATGGGTTCTCTACTGGAACAATTGTTGGAATTGTTGCTGGGGCATGTGTGATTGTCATATTGATGCTCTTTGCTCTTTGGAAGATGGGTTTCCTTTGTCAGAAAGATCAAACAGACCAAGAACTTCTAGGTCTGAAAACAGGTTATTTCAGTTTAAGACAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATTCAAGGGTGTACTATCAGATGGTGCTGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAATCGTGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAACCTTGTGAAACTTTATGGCTGCTGCATTGAAGGAAACCAGCTGCTGCTAGTATATCAGTACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAACATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGCAAATTTGTCTGGGTATAGCAAAGGGCTTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTGCACAGGGATATTAAGGCAACCAATGTCTTACTTGATAAACATCTGCATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAATACTCATATCAGCACAAGAATAGCTGGGACAATTGGTTACATGGCTCCTGAGTATGCTATGAGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGAATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTATAGGCCAAAGGAGGAGTTTGTATATCTTTTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCCATGAGAATGCTGCTGTTAGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCATGTATGTCATCAGTAGTGAGCATGCTTGAGGGAAAAACTCCAATTCAAGCACCAATAATTAAACGCGGTGACAGTGCAGAAGATGTAAGATTTAAAGCCTTTGAGATGCTATCACAAGACAGTCAAACTCATGTCTCTTCTGCATTCTCAGAAGAAAGTATAGAGCAAAGAAGCAAATCAATGGGGGGACCATGGCTTGACTCCTCCATATCACTTCCAAGTAGAATTGATTAG 3024 0.3995 MMRFVMSSSSKRVSKCFIFVFLASLHFGSNAQLLPQDEVKLLQAISDKVENLNWKVTQRSCNGDRGFDNRNISRDNKSQIIRNVTCDCSFNNNTTCHVTAIALKGLNISGPIPDEFGNLTRLEILDLTWNNFNGSIPKSLGRLSSVVNLSLLGNRLTGSIPSEIGDMASLQELNLEDNQLEGPLPQSLGKMSNLLRLLLSANNFTGIIPDTYGNLKNLTQFRIDGSSLSGKIPSFIGNWTKLDRLDLQGTSLDGPIPSVISYLTNLTELRISDLKGPTMTFPNLKNLKLLLRLELRNCLITGPIPNYIGEIKSLKTIDLSSNMLTGSIPDSFQDLGNLNYLFLTNNSLSGPIPDWILSINQQIDLSLNNFTKTSANNCQRPDLNLASSLSRTASTSILCLKMGQPCSGKPLFHSLFINCGGPETKFEGNEYEADLSPYGISNYVPGNSGKWAYSSTGVYLGNAKADYIATNQLSLDINGPDYYHTARIAPLYLNYYGLCMLNGNYKVKLHFAEIAFSDDQSYCNHGKRVFDVSIQGFKYLKDFNIAKEAGGVGKGITREFNVNVTESTLEIHLSWAGKGTNAIPIIGVYGPLISAITVTPNFKVYAHGFSTGTIVGIVAGACVIVILMLFALWKMGFLCQKDQTDQELLGLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVFKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYQYMENNSLARALFGKEHERMQLDWPRRMQICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLHAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSSEEAMRMLLLALLCTNPSPTLRPCMSSVVSMLEGKTPIQAPIIKRGDSAEDVRFKAFEMLSQDSQTHVSSAFSEESIEQRSKSMGGPWLDSSISLPSRID* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1962 1007 Gene3D Phosphorylase Kinase; domain 1 635 743 - -
Gso12g1962 1007 Pfam Protein tyrosine and serine/threonine kinase 672 891 IPR001245 GO:0004672|GO:0006468
Gso12g1962 1007 Gene3D Ribonuclease Inhibitor 194 277 IPR032675 -
Gso12g1962 1007 SUPERFAMILY Protein kinase-like (PK-like) 652 940 IPR011009 -
Gso12g1962 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 219 IPR000225 GO:0005515
Gso12g1962 1007 SUPERFAMILY L domain-like 95 370 - -
Gso12g1962 1007 Pfam Leucine rich repeat 292 348 IPR001611 GO:0005515
Gso12g1962 1007 CDD STKc_IRAK 674 941 - -
Gso12g1962 1007 SMART serkin_6 668 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1962 1007 MobiDBLite consensus disorder prediction 975 1007 - -
Gso12g1962 1007 Gene3D Transferase(Phosphotransferase) domain 1 744 951 - -
Gso12g1962 1007 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515
Gso12g1962 1007 Pfam Leucine Rich Repeat 121 142 IPR001611 GO:0005515
Gso12g1962 1007 Gene3D - 414 601 - -
Gso12g1962 1007 Gene3D Ribonuclease Inhibitor 70 193 IPR032675 -
Gso12g1962 1007 PANTHER - 76 300 - -
Gso12g1962 1007 PANTHER - 387 996 - -
Gso12g1962 1007 PANTHER - 300 356 - -
Gso12g1962 1007 Pfam Malectin domain 415 596 IPR021720 -
Gso12g1962 1007 SMART LRR_typ_2 167 190 IPR003591 -
Gso12g1962 1007 SMART LRR_typ_2 311 334 IPR003591 -
Gso12g1962 1007 SMART LRR_typ_2 119 143 IPR003591 -
Gso12g1962 1007 SMART LRR_typ_2 191 214 IPR003591 -
Gso12g1962 1007 SMART LRR_typ_2 335 359 IPR003591 -
Gso12g1962 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Gso12g1962 1007 ProSiteProfiles Protein kinase domain profile. 668 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1962 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 300 - -
Gso12g1962 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 300 356 - -
Gso12g1962 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 387 996 - -
Gso12g1962 1007 Gene3D Ribonuclease Inhibitor 278 393 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1962 Gso-Chr12 43630362 43643051 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1962 17 1005 Receptor kinase-like Gene Family AT1G53440 59.960 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1962 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1962 - - gmx:100784920 1914.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1962 12 43630362 43643051 Gso11g2879 11 44538475 44550077 GST