Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1949 ATGAAGAGGAACGGTTTGATGAAAGACTACACTCATGACCACAGTTGTGTCAACAAGAACCCAACAACAACAAAAGACTTCTCCCATGTTGTTGCCAACTGCTATAACAACAACCAAATGGCTAAAGAGTTTTGGGAGTGCAGCAGCAGCAGCAACATCAACAAATCTCATCATCACAACATTCACAGCAATAATAATATTGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGCAGCTTCTGCAGAAAGGAGTTTAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCATCACCCCCAACTCATGAAGTTCAAGGTCAAGCTGCTGGCCCTATAAGGCTCAACCTTAATCTTAACCCTAACAACAACTCAGCCTCATCATCATCTTTATCCTTGTTACCACCACCACCATCTTCATCTTCAGCAACTACTACTACTCTTAAGCCTGTTGTCACTTGCACATTGCCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGCATTGTGTTGAACCCTTTGAGCATAATGACCACCCCAGAGCACTACTCCAAGTCAAAGATTCCAGAATCTTTTTCAGCTGGGGTTGGAGAATATCATGATCATGCTTTTGCAAGGGAAGATGGGTGCAAAATGTTGAAGAAGGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGGTTATGATTTGGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 819 0.4408 MKRNGLMKDYTHDHSCVNKNPTTTKDFSHVVANCYNNNQMAKEFWECSSSSNINKSHHHNIHSNNNIADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEVQGQAAGPIRLNLNLNPNNNSASSSSLSLLPPPPSSSSATTTTLKPVVTCTLPLFVSPTPPSPSSELKRWVVVDGIVLNPLSIMTTPEHYSKSKIPESFSAGVGEYHDHAFAREDGCKMLKKGEILRMDLEIGLPRGYDLDLELRLGTTYS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1949 272 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 272 - -
Gso12g1949 272 SMART c2h2final6 83 105 IPR013087 -
Gso12g1949 272 MobiDBLite consensus disorder prediction 130 163 - -
Gso12g1949 272 MobiDBLite consensus disorder prediction 111 163 - -
Gso12g1949 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Gso12g1949 272 SUPERFAMILY beta-beta-alpha zinc fingers 80 109 IPR036236 -
Gso12g1949 272 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Gso12g1949 272 PANTHER OS07G0101800 PROTEIN 9 272 - -
Gso12g1949 272 Pfam C2H2-type zinc finger 83 107 - -
Gso12g1949 272 Gene3D Classic Zinc Finger 79 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1949 Gso-Chr12 43446448 43447987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1949 64 268 C2H2 Transcription Factor Family AT3G23130 42.029 1.22e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1949 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1949 - - gmx:100781722 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1949 12 43446448 43447987 Gso11g2901 11 44769510 44770985 GST