Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso12g1943 | ATGACAGGTCTGAAGAGATTTAGAGATGAAGATGTGAAACCATTTTCTGGTTTAAATGCACCTGAAAGTCAGAATGAAATTAGAGGCCAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAACACTTCTACAGAAATGACAGCCATTGAGAAGTTTCTTCAACTCTCGGATTTTGTTCCTAGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGATTGGGTCATTGCTGGCACATGCTTGGAAAGTAGGACCAAATATTTCATTAATCTCTATTGTTTGCACTGTAAGATACCTTTCTAAGCTTTTATAA | 345 | 0.4029 | MTGLKRFRDEDVKPFSGLNAPESQNEIRGQQPSSSALAHQLSLPNTSTEMTAIEKFLQLSDFVPSKIRAKRGCATHPRSIAERIGSLLAHAWKVGPNISLISIVCTVRYLSKLL* | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso12g1943 | 114 | MobiDBLite | consensus disorder prediction | 18 | 41 | - | - | |
| Gso12g1943 | 114 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 1 | 84 | - | - | |
| Gso12g1943 | 114 | PANTHER | TRANSCRIPTION FACTOR BHLH FAMILY-RELATED | 1 | 84 | - | - | |
| Gso12g1943 | 114 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Gso12g1943 | 114 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso12g1943 | Gso-Chr12 | 43387407 | 43388337 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso12g1943 | 1 | 84 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G42280 | 49.425 | 1.14e-19 | 80.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso12g1943 | - | - | gsj:114368359 | 165.236 |