Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1936 ATGTCGCGTTCGTCGGGGAAGCCGGTTTCCGAGGTGGTCGGCATAGACGCCACCTTCGCCGATCGGTTCCGCGACGCGCTCACCTGCGACGACGGCAGCAACAACAACAACAATATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCGCCGGTCTCGCCATTGCGGACCACGCGCGGGCCTGCCGCCAGTAGCAGCTCCAGCTCCTCGGGCTCCTTCTCGGGCCGAACCGGGCCCACCCGCAAGCCTGAATCGGCTCAAAATAATAGCAACACCAACACTCACACTCATAGTCTCAGCAACAACAACAACTCCGGTGAACTTTCTGGTTCAAGTGAGAACAGCCCCACCGCGCGTAAACCGGGTCACAGGAGATCTGACTCCGGATCTGCGCTGGTGCCGTTGATATACTCCGGTCAGACGGCGACTTCGCCGGCCATGAATGTTCTTCCGACCGGGAACATTTGTCCATCTGGGAAGATCTTGAAGGCGGGGATGATGGCGAATCGGAGTAGCAGAACTAGTAGAAGCGATGTTTTGGGGTCGGGGATGGGAAACTACGGCCACGGAAGCATAATGCGTGGCGGAGGGAAGGTGGAGCCGGCGAGTTCTCGCGGCGGCGGCGGTGGGAATGAGACGGTGAAGAAAGGGGGGCACGTGCAGAGTGTGGATCCGGAAGAGTTGAAGAGGTTGGGGAACGAGTGTTACAAAAGGGGGAACTTTGCTGATGCGTTGAGTCTCTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGCCGCTTACCGGAGCAACCGCGCGGCGGCGCTGACGGGCCTCGGACGGTTGGGTGAGTCTGTGAGGGAATGTGAGGTGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTGGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTATCCTGGGATGCAGCCAGATCCGTCTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTACGGAGGGTTGGGGAATGGAAGAGTGTTCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCGCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCGGAATCAATTTTGTTGAGTATTCCCAAATCAGAGCTGCAAACTAATTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTATCAGAGGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCAAGTCAGATTGATTCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGCGGAAATGATCTTTTTAAATCTGAAAGGTACACTGAGGCTTGCTCGGCATATGGGGAAGGTTTGAGACTGGACCCTTCGAATTCTGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAACAGTCAATTGAAGACTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGAGCTGCATCAAACAGTAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTATGAGATCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGAGGGGAAGAAGTATATAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTCTCAGGTCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTTGCAATGCAAACAAATATGGCCATTTGTCAATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAGCAAAGCCCAACAGTTGCAACTGCAGAGAACGTTCGGATTGTACCGACCTTCAAGATATACAAAAATGGCAGCCGGGTGAAGGAAATCGTATGCCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2097 0.5064 MSRSSGKPVSEVVGIDATFADRFRDALTCDDGSNNNNNINKPDFRELDLGSPVSPLRTTRGPAASSSSSSSGSFSGRTGPTRKPESAQNNSNTNTHTHSLSNNNNSGELSGSSENSPTARKPGHRRSDSGSALVPLIYSGQTATSPAMNVLPTGNICPSGKILKAGMMANRSSRTSRSDVLGSGMGNYGHGSIMRGGGKVEPASSRGGGGGNETVKKGGHVQSVDPEELKRLGNECYKRGNFADALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGESVRECEVAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPDPSEMQRLQVVEKHISKCGDVRRVGEWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESILLSIPKSELQTNSSSQARFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDSRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEQSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNLQCKQIWPFVNTLCGRYPSINFLKVDIQQSPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1936 698 SMART tpr_5 532 565 IPR019734 GO:0005515
Gso12g1936 698 SMART tpr_5 418 451 IPR019734 GO:0005515
Gso12g1936 698 SMART tpr_5 226 259 IPR019734 GO:0005515
Gso12g1936 698 SMART tpr_5 498 531 IPR019734 GO:0005515
Gso12g1936 698 SMART tpr_5 260 293 IPR019734 GO:0005515
Gso12g1936 698 SMART tpr_5 464 497 IPR019734 GO:0005515
Gso12g1936 698 MobiDBLite consensus disorder prediction 27 131 - -
Gso12g1936 698 MobiDBLite consensus disorder prediction 191 223 - -
Gso12g1936 698 Pfam Tetratricopeptide repeat 419 449 IPR019734 GO:0005515
Gso12g1936 698 SUPERFAMILY TPR-like 226 453 IPR011990 GO:0005515
Gso12g1936 698 Gene3D Glutaredoxin 591 697 - -
Gso12g1936 698 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Gso12g1936 698 Pfam Thioredoxin 604 689 IPR013766 -
Gso12g1936 698 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Gso12g1936 698 Pfam Tetratricopeptide repeat 232 292 - -
Gso12g1936 698 MobiDBLite consensus disorder prediction 58 118 - -
Gso12g1936 698 SUPERFAMILY Thioredoxin-like 501 696 IPR036249 -
Gso12g1936 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 16 696 - -
Gso12g1936 698 CDD TRX_family 603 690 - -
Gso12g1936 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 696 IPR044534 -
Gso12g1936 698 Gene3D Tetratricopeptide repeat domain 224 584 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1936 Gso-Chr12 43310838 43314906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1936 240 562 Glycosyltransferase AT3G04240 21.341 8.49e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1936 - - gmx:100804531 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1936 12 43310838 43314906 Gso11g2915 11 44893846 44897542 GST