Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1935 ATGTTGATCAGCAATGAAACAGAGGATTTATGTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAGGTATTTTCTGGTAATGGCATTTTTCAGTCTAATCAGAAGTGTCTTGTTCCTGTAGCTATCAGCTTTGAACATGAATCCGCTAAAAACACATTTAAATCATTCTGCTCTAGTAATGAAAACTCAGTTGTATTGCATCCATCATCTTCTAGACTTACACACCCTGAAGAAGAGGACTTTAATGTAATTCAGCATTCCAAAGAGGCTGCTCTGGGGTGTGTGCCAGAGAGTTTCATTTGTGAAGACCAGAATGACGAGGATGTGAATGTCAAACGTATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCTGATTCAGAAAAAAAATTGAGTTCATCACGACTTTCAAAAGTAGTAGTTTCTAACCTGTCTCGTGCTGCTACAAGCTGTGATAGTGAACCAATTGCATTTCATTTAGTTGAATCATCTAAACATGGTGTGATATCTAGCTGTTATCTATTGAACCATAACAAGGTAAATAAACAAGCTGCCAAGGATAAGGTAGATGTTACAAATTTTAACTCAACAACAGCAGATGGAAATATTGCAAAAGAGTTGTGTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCGAACAGGCGTGTAGTTACCAGTCCGTCAACCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCCGAGGAAATGGTGGAATCTTCTAATGTAGGCATCTCAAATGCATCCTCAATGCTAGAGGAAGAGGACCCTCGTACTATACTGCAGTTTCATATTTTGCAGTTGCTAAAGATGGCAGGATGGTCTATTGAGAAGCGTCAACGGCCTAGTAGGCGTTACCCAGAGTCAGTTTATAGGACACCAGAGGGAAAGACTATTCGGGAGTTTACAAAGGCTTGGAGATTATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTTATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTACACTGATAAATGTTGAAAAAACAAAGATGCAGTCAGAAGACCCTGCTGCTGTATTGGCTTATCGATGGTGGCTTTTGGATCCTTTTGTAGTAGTTATATTTTTTGATAGAAAGATTGGTGTGCTGAAAAAGGGAGAGGCAGTGAAAGCAACTTGGAGTTTAGTTTCTAGCAAATATATGGTGGCATGTGCTCCCATTGGTTCAAGCTCTGGGAATTTGAATCAGGTACCTGGAGGGTCTAATGTAGGTGCTGTTCATCAAGCCAGAATTAGAAATTCCAAAAGTTTTGATAAACAGAGTTCAGAGAACTATCTGGAAACAAATAAAATTATTGATGGAGATCTGCCAATGGACATGTCAGAAGAAAATAATGCATCCAGTGTGAGCCATGGCCTGGTTCATTCTCATGACTCAAGGGATATGCAACAGTCTGAATGTAGTGAGGAAGAAGGTGGCAAAATCTCAGTAGATTCTGTATTTGGGAAAGATAACAAATATTCTGCTTCTGATGTTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACTGAGTATGTTCTACCATAGTGACATGCTGGGTTCAACTGTTACTGACCAGGTGCAGTTACTAGATGGTGAAGCAAGTGGGTTGGAAGAGGTCCAGGATTATCTAGTTGACAATGCGGGAAAGAAAAGAAACTGCAGAAAGTTATCATCTGTTGGTGCAATTCAGAGAAATATTAGGAAAACAAACTGCCCCACAGCTGGAACAGATAAGTCTAACAGATGCCAGATTAAAGACGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCAGCCCAAAGGCAATCCGGGGTAATTCTAGTGCTAAATCCCGCAAATCAAGGGGTCAGAGAAAGCTTAAAAGCCAAAAGGGCCGTTGCAGGTTGCTACCAAGGAATCCCTGTAATGCAGGGAAGCACAATAAGGACTGCAATAGGTTTTATTTGGGTGCTAGGACAATATTGTCCTGGTTGATTGATAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATCCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTTTTATTTGTACATGTTGTGATAAGGTGCTCACATTATCAGAGTTCAAGTTTCATGCTGGGTTTACAGTGAATCGCCCCTGCTTGAATATTTTCATGGAGTCTGGTGAGCCCTTTACACTCTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAGAAGCCAAAATCAAGCCGTACATGCTGATGATAATGATAAAAATGATGATTCGTGCGGATTGTGTGGCGAGGGGGGTGAGCTGATATGTTGCGATAACTGTCCATCTACTTTTCACCTAGCTTGTTTGTCCACTCAGGAGATCCCAGATGGCGACTGGTACTGCACTAACTGCACTTGTAGGATATGTGGAAATTTGGTCATTGACAAAGACACTTCAGATGCGCATGATTCATTACAATGTTCACAGTGTGAACATAAATATCATGAGAAATGCCTTGAAGATAGAGATAAACAAGAAGTAGCAATTTCAGACACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTGTACTCTGGACTCCAGACTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCATCTCATGGACCCTTCTTAGATGCATCCACGATGATCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCCGTTGCTCTTACTATAATGGAGGAGTGTTTTGTGTCAATGTTTGATCCTAGAACAGGCATCCACATGATACCCCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTTTAAACTTTCAAGGGTTTTACACCATTGTATTGGAGAAAAAGGATGTATTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTAGCAGAGATGCCTCTAATTGCTACTTGCAGTCAGTATCGTCGCCAGGGAATGTGCCGACTCCTTGTGAGTGCTATTGAACAGATGTTAATATCTTTCAAGGTGGAAAAGCTTGTGGTATCAGCCATTCCAGATTTGGTCGAGACATGGACAAAGGGCTTTGGATTTATAACTGTTGATGACATTGAAAGGCAAAGATTGAATAAAATTAACTTGATGGTTTTTCCTGGGACAGTGTTACTTGTGAAATCCTTACATGGGAAGGAGAAAATTGAAGGACTGTGTGATCTATCAATTCTAGCAACAGATGAATCAATCAAAGCAGGTATCTGTTCTGAAGGAATGGCCATTTCTGAATCATTTGCACAAGTTGTTGGAAACATAACTACCAACAAAGGTGGAGCAAAGTCAGAACATGAACCTGTGGATGGAAAAAATCAATCAGACTATGAAGCTGGCAGTGAAACAGGCAGAGATGATAAAATACAAGCTGTTGACACTGCAATAGAAGCCAAAGAATCAACAGAAATAAGTAGTTCTTCTAGAGAAGAGAAGGTCACCCAGTTGAAAGTGTCAGGTGACTCAGAGAAATCTATTGAAGAAAACAATGTGAATGAATTGAGAACAAGCAACAAAGCAGAAATGACAAGTGATTCAGTACAGCAATCTAGTGAGAATTGTTGTGCTGACAAAGATGGTGCTGAACCAGCTATTAGTATTGTTGAGGACAAGAATATCAAAATAGGTGAGTGTCAGGAAAATGCTTTGCAGGGTCATTTTTCAAATTTGTCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGGACTTTTGCAAAGTCTGCAAGCTGA 3936 0.3996 MLISNETEDLCDDNFEGSNEERQIFSEVFSGNGIFQSNQKCLVPVAISFEHESAKNTFKSFCSSNENSVVLHPSSSRLTHPEEEDFNVIQHSKEAALGCVPESFICEDQNDEDVNVKRMKFSLHELACSRSDSEKKLSSSRLSKVVVSNLSRAATSCDSEPIAFHLVESSKHGVISSCYLLNHNKVNKQAAKDKVDVTNFNSTTADGNIAKELCVSKAAASPVSQESFANRRVVTSPSTTVVKKSGSPLNPEEMVESSNVGISNASSMLEEEDPRTILQFHILQLLKMAGWSIEKRQRPSRRYPESVYRTPEGKTIREFTKAWRLCGELLSVEKCNFMCRDYKEWTDISQFWSDLSSTLINVEKTKMQSEDPAAVLAYRWWLLDPFVVVIFFDRKIGVLKKGEAVKATWSLVSSKYMVACAPIGSSSGNLNQVPGGSNVGAVHQARIRNSKSFDKQSSENYLETNKIIDGDLPMDMSEENNASSVSHGLVHSHDSRDMQQSECSEEEGGKISVDSVFGKDNKYSASDVILKKKMRRKCKRVSEIKLSMFYHSDMLGSTVTDQVQLLDGEASGLEEVQDYLVDNAGKKRNCRKLSSVGAIQRNIRKTNCPTAGTDKSNRCQIKDDDLLVSAIFRNKDFSPKAIRGNSSAKSRKSRGQRKLKSQKGRCRLLPRNPCNAGKHNKDCNRFYLGARTILSWLIDNGVISLNDVIQYRNPKDNVVIKDGRITKDGFICTCCDKVLTLSEFKFHAGFTVNRPCLNIFMESGEPFTLCLLQAWSAEYKARRSQNQAVHADDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGDWYCTNCTCRICGNLVIDKDTSDAHDSLQCSQCEHKYHEKCLEDRDKQEVAISDTWFCGQSCQEVYSGLQTQVGLVNQVADGISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMFDPRTGIHMIPQVLYNWGSEFARLNFQGFYTIVLEKKDVLISVASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEQMLISFKVEKLVVSAIPDLVETWTKGFGFITVDDIERQRLNKINLMVFPGTVLLVKSLHGKEKIEGLCDLSILATDESIKAGICSEGMAISESFAQVVGNITTNKGGAKSEHEPVDGKNQSDYEAGSETGRDDKIQAVDTAIEAKESTEISSSSREEKVTQLKVSGDSEKSIEENNVNELRTSNKAEMTSDSVQQSSENCCADKDGAEPAISIVEDKNIKIGECQENALQGHFSNLSCKTFLGSNFDTDSNIECSVMYDETAFFGTFAKSAS* 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1935 1311 SMART PHD_3 800 841 IPR001965 -
Gso12g1935 1311 SMART PHD_3 842 896 IPR001965 -
Gso12g1935 1311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 844 IPR013083 -
Gso12g1935 1311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 845 899 IPR013083 -
Gso12g1935 1311 MobiDBLite consensus disorder prediction 490 509 - -
Gso12g1935 1311 Pfam PHD-finger 801 842 IPR019787 -
Gso12g1935 1311 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 948 1074 IPR016181 -
Gso12g1935 1311 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 951 1098 IPR000182 GO:0016407
Gso12g1935 1311 PANTHER INCREASED DNA METHYLATION 1 1 462 - -
Gso12g1935 1311 PANTHER INCREASED DNA METHYLATION 1 462 1309 - -
Gso12g1935 1311 MobiDBLite consensus disorder prediction 1148 1179 - -
Gso12g1935 1311 Pfam Tify domain binding domain 723 773 IPR032308 -
Gso12g1935 1311 PANTHER PHD FINGER PROTEIN 12 1 462 IPR042163 GO:0003714|GO:0045892
Gso12g1935 1311 PANTHER PHD FINGER PROTEIN 12 462 1309 IPR042163 GO:0003714|GO:0045892
Gso12g1935 1311 Gene3D - 949 1084 - -
Gso12g1935 1311 MobiDBLite consensus disorder prediction 639 663 - -
Gso12g1935 1311 ProSiteProfiles Zinc finger PHD-type profile. 798 843 IPR019787 -
Gso12g1935 1311 MobiDBLite consensus disorder prediction 1144 1215 - -
Gso12g1935 1311 SUPERFAMILY FYVE/PHD zinc finger 784 842 IPR011011 -
Gso12g1935 1311 CDD PHD2_CHD_II 800 840 - -
Gso12g1935 1311 MobiDBLite consensus disorder prediction 1199 1215 - -
Gso12g1935 1311 MobiDBLite consensus disorder prediction 477 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1935 Gso-Chr12 43279035 43288883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1935 1 1107 PHD Transcription Factor Family AT3G14980 40.845 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso12g1935 TDBD 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1935 - - gmx:100777440 2578.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1935 12 43279035 43288883 Gso11g2917 11 44926178 44936350 GST