Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1933 ATGGGATCACCATTCAAGCCCATCTCATGTACCAGAAAAACTCCATACATAATAGAAACAAAGAACTTGTCATACAAGTTGTGCAGCCAGCTTGATGAGTGTAGAAGCCTTTGTTTTGGTTCCAATCCGGGGAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCAGGGGAGCTTACTGCTATTGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCTGGGAGAATACCCTCCTTTAAAGTGTCTGGCCAAGTTCTTGTCAATCATAGGCCTATGGATGTGAATCAGTTTAGAAGAACATCAGGGTATGTCACACAAGATGATGCTTTGTTTCCATCACTCACAGTTAAAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCCGGGGGAAGAAAAGTTGCTGCCATCAGAGTTGAAGAGTTGGTGAAGGAACTTGGGTTGGACCATATTGCAGATTCAAGAATTGGAGGTGGATCAGACCATGGCATATCTGGCGGAGAGAGGCGTAGAGTTTCCATTGGTGTGGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTTAGTGTGGTCTCATTGCTTAGACTTGTTGCATTTAACCAAGGTAAGACTATTATCTTAACCATCCACCAACCTGGTTTCCGAATCCTAGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAGGCTAGGCTTAAGTTAGCCGGGCACCACATTCCTGACCATGTCAATGTACTCGAGTTTGCTCTTGATGTCATGGAATGCTTGGTTATACATACTTCAGAATCTGTGGACAACCAGTTTCTGCTCAAAGAGAACCAAGATCACAAAATGAGGATGCAGTACTCTAAGGTTGCCAAAGAAAAGGCACTTATGTACTCAAATTCTCCAACGGAGGAGATTTCAATCCTAGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAACTCTTTGTCACCCGGGTCATACAAGCCTTAGTAGCTGGTTTTATACTGGGGAGCATATTTTTCAATGTTGGCAGTCAACGCAGTCATGTGGCATTGCAAACAAGAAGTGGTTTCTTTGCTTTCAGCCTTACTTTTTTGCTATCATCAACAACAGAAGGCTTGCCTATTTTCTTGGAGGAGAGAAGAACTTTCATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCCTCCTATGTTTTAGCAAATACCCTTGTGTTCCTTCCTTTCCTTCTATTGGTTGGTCTTCTGTATTCTACTCCAGTGTATTGGCTTGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTACTCATGTCGAATTCTCTTGTGGCTTGTTTCAGCGCTCTCGTGCCGAATTTCATCCTCGGAACCTCTGTGATTGCAGGTCTAATGGGGTCCTTCTTTCTATTCTCAGGGTATTTCATATCAGAAGAAAAAATACCAAGTTATTGGATTTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAATATGGGGGAGAGCAAGGGAAAATGAGATGCTTAGAAATTAACAATGGAAAATGCATACTATATGGAGTTGAATTCTTAAGACAACAGGGTCTGAGAGATTCACAAAAATGGACCAATTTGGCTGTAATGTTGAGCTTCATAGTGGGTTATAGAGTGCTTAGCTTTTTTATTCTTTGGTTTAGATGTTACAGGACCAGAAAATAG 1833 0.419 MGSPFKPISCTRKTPYIIETKNLSYKLCSQLDECRSLCFGSNPGRGAKFILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRIPSFKVSGQVLVNHRPMDVNQFRRTSGYVTQDDALFPSLTVKETLMYSAMLRLPGGRKVAAIRVEELVKELGLDHIADSRIGGGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVVSLLRLVAFNQGKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMECLVIHTSESVDNQFLLKENQDHKMRMQYSKVAKEKALMYSNSPTEEISILGQRFCCNIFRTKQLFVTRVIQALVAGFILGSIFFNVGSQRSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLLVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLMINEYGGEQGKMRCLEINNGKCILYGVEFLRQQGLRDSQKWTNLAVMLSFIVGYRVLSFFILWFRCYRTRK* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1933 610 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Gso12g1933 610 Pfam ABC-2 type transporter 333 544 IPR013525 GO:0016020|GO:0140359
Gso12g1933 610 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 602 - -
Gso12g1933 610 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524
Gso12g1933 610 Pfam ABC-2 type transporter 231 301 IPR043926 GO:0140359
Gso12g1933 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 266 IPR027417 -
Gso12g1933 610 CDD ABCG_EPDR 41 256 - -
Gso12g1933 610 SMART AAA_5 60 251 IPR003593 -
Gso12g1933 610 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 2 602 - -
Gso12g1933 610 Gene3D - 11 274 IPR027417 -
Gso12g1933 610 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1933 Gso-Chr12 43263773 43266009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1933 31 261 Calmodulin-binding Proteins AT2G36910 28.163 1.52e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1933 K05681 - gmx:100776372 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1933 12 43263773 43266009 Gso11g2919 11 44946234 44948542 GST