Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1931 ATGGTGAGAGCAAGTGGTGGAGGAGGTGGGGAGATAGTGGAGGTTGAAGGCGGTCACATTGTGCGGTCTACAGGGCGGAAGGACCGTCACAGCAAAGTGTGCACCGCCAAAGGCCCGCGTGACCGACGGGTGAGACTATCGGCCCACACCGCGATCCAATTCTACGACGTCCAGGACCGCTTGGGCTACGACCGCCCCAGCAAGGCCGTCGACTGGCTCATCAACAAGGCCAAGTCCGCCATCGACCAACTTGCCCACCTCCCTCCCTGGAAACCCACTCTCCCTGCACCTCAAAACGACGACGAATCTGACAAGCTTAACCCCAACCCTAACCCTATCCCTATCCCTATCCATCACCCTGATGCTGAAATTCTCCACCAGTTCAACGAGAACGATACCGAGAACCTTCGGTGCGATGGAGGTGGAGGTTCCAGTTATCTTCCGATGGATAACGACGCGATAAGGTCGTTTTTCCCCACAACGACGTCGTCGTTGGTTCACTTCCAGAGCTACCCACCGGATTTGCTTTCCAGAACCAGTAGCCAGGACCTGCGTCTCTCGCTTCAGTCTTTGCAAGACCCGGTTTTGCTTCACCAGAATCACCACAACAACGAGCACGTGCTTTTTGCTGGAACCGGGTTTGAAAACATGGTAGCGTGGAATAGTAGTAGTAATAATAATAATAATACTGCTTCTAATGATACTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGGGTTTGTGTTTAACGCTCCTTCGACTTTGACAGGGCCGGCGACGGTGGGGTCGCCGGCGGTGGTGTTTGGTCATGGTCTTGGTCAAGGCCAGTATTTTACTCAGAGGGGACCCCTTCAGTCCAGTAACAGCCCTTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTCGCTGCCGCCGCCGATCATCGGCATCATCATCATCACTATCTGTCTCCCGCGGCGGCCGCGGCGGCGTTGGTGTATCAGTCTGCTCCTTCAACGGCGGCATTTGCAGCGGCGCCCGGTGGCTTCTCGGGATTCCGCGTGCCGGCACAAATTCAGGGCGAGGAGGAGCATGACGGCGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCACCGTTGA 1137 0.5682 MVRASGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLPPWKPTLPAPQNDDESDKLNPNPNPIPIPIHHPDAEILHQFNENDTENLRCDGGGGSSYLPMDNDAIRSFFPTTTSSLVHFQSYPPDLLSRTSSQDLRLSLQSLQDPVLLHQNHHNNEHVLFAGTGFENMVAWNSSSNNNNNTASNDTCGGGGGGGGGGGGGFVFNAPSTLTGPATVGSPAVVFGHGLGQGQYFTQRGPLQSSNSPSVRAWIDAPSFVAAAADHRHHHHHYLSPAAAAAALVYQSAPSTAAFAAAPGGFSGFRVPAQIQGEEEHDGGVSDKPSSASSDSHR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1931 378 MobiDBLite consensus disorder prediction 87 111 - -
Gso12g1931 378 PANTHER TRANSCRIPTION FACTOR TCP4 7 100 - -
Gso12g1931 378 PANTHER TRANSCRIPTION FACTOR TCP4 142 377 - -
Gso12g1931 378 MobiDBLite consensus disorder prediction 1 32 - -
Gso12g1931 378 ProSiteProfiles TCP domain profile. 26 84 IPR017887 -
Gso12g1931 378 MobiDBLite consensus disorder prediction 352 378 - -
Gso12g1931 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 142 377 IPR005333 GO:0003700
Gso12g1931 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 100 IPR005333 GO:0003700
Gso12g1931 378 MobiDBLite consensus disorder prediction 355 378 - -
Gso12g1931 378 Pfam TCP family transcription factor 25 89 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1931 Gso-Chr12 43227507 43229659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1931 6 376 TCP Transcription Factor Family AT1G53230 45.250 8.71e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso12g1931 TCP 5.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1931 - - gsj:114379310 618.231