Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1928 ATGGCAAAAACGAGGCCAGGCAGAAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGATAATAGGAACAACGTGAAGGTGCGTGTGAGGTGGTATTATAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCAAAGGAGCTGTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCACACAATTGAAGGGAAGTGTGTTGTGCACTCTTTTAAGAACTATACCAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTCACGCCTGACCGTGTTGCTGTGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGACCATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGGCAAGGTTGAGCCGAAGCGGCGGAAGAGATGA 651 0.4869 MAKTRPGRKDVDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPGSDGKVEPKRRKR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1928 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Gso12g1928 216 Pfam BAH domain 23 135 IPR001025 GO:0003682
Gso12g1928 216 SMART PHD_3 140 187 IPR001965 -
Gso12g1928 216 MobiDBLite consensus disorder prediction 187 216 - -
Gso12g1928 216 Pfam PHD-finger 140 188 IPR019787 -
Gso12g1928 216 CDD BAH_BAHCC1 22 156 - -
Gso12g1928 216 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Gso12g1928 216 Gene3D - 2 134 IPR043151 -
Gso12g1928 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Gso12g1928 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 198 IPR013083 -
Gso12g1928 216 PANTHER OS08G0421900 PROTEIN 3 212 - -
Gso12g1928 216 PANTHER BNAC03G64850D PROTEIN 3 212 IPR045205 GO:0006325|GO:0035064
Gso12g1928 216 SMART BAH_4 21 136 IPR001025 GO:0003682
Gso12g1928 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1928 Gso-Chr12 43192618 43199559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1928 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 3.03e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso12g1928 BAH 5.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1928 K25868 - gmx:100800993 462.225