Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1919 ATGCGATCATCTCCGTCTTCATTGGGTTCGTCGTCTCGATTGGGTTCGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAAGAGTACACTCGAAACCATGGTGAGTTGAATGAGGATAATGAGTTGAGTGAGGATAATGAGGATTTGAACCCTGATGTGGGGGTTCGTCGAAGCTCCCGGGTTCGCTGTGCCCCAGTGCTGCTCGACGCTTCTCCAGCTCCGCCGAAGAAAAGGCGGAAGGTGGGGAAGGGTGGAATTAGTCGTAGTGTGGAGGGTGCTAGGAGATTAGGGCGAAAAAATAAAGGTTCTGGTGGGACTTGGAGTTCTAGGTTGAGATCAAGAGTTGGCAATGTAGGTGTTAGGGTGAAGGAGGAGACAGAATCGCCTCGGGGGAAGAGGAAGCTTTTTGAGGGAATGGTTAGAAGGAGGGGTGATAGGGAGGTTGGTAGGAAAGAGGAGTTGGGAGGTTTGATGCCGAAAGTGGTTAAGTCAAAGAGACCGGGGAGGATTAAAGCCACAAAGCATGAGGAAGGGCATGAAGAGGATGTGTCTGATGGGAGTTTGGAGGAGAGTAAGAGTCAGGAAGTGGAGATTGTGTTGAGCAGTGGTGAGGAGAGTGATTCTGATTCAGAAACCGAATCGTGTGGAGGGGATCGCATGGATGATTCGGATGGAAATACCTCTCCTGTGATAGGGAATGAGGAGGGGAATCTGATGGATGATTCAGATGGAGATGTCTCTCCTATGATAAGGAATGAGGAGGGGGATCAGATGGATGATTTGGATGGAAATGACCCTCTGATGGTAGGGAACGAGGAGAAGAACTTACCCAACGATTTGCAAATAGAGGAATGTGGTGGTAACGCTGAACCGTCTCCAGTGGAACATTTAGTTAAAGTGGATGATCAGTTAGAGAGTGCGAAGGAAAGCAAAAGAGTAGGTGATGTAGCTGAACAGGTAGATAATAAAGGATCTGTTGGTAAGGAGGTTGATGTCAACGAAAATGTCTTGAAAGATGCAAATGATGGCAAGGAAGCTGACGTTGATGAAAATGTCTTGAAAGATGCAAATGTTGGGAGGCTGGATGAGTTGAAACATGCTTCAGTTGACAAGCGTGGTCACCAGCGTATCAAAGAGGGAAGACGGTGTGGTTTGTGCGGTGGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAGCTCAGGATAATGGTGAAAGTGAGAATGAAGCTTATAGTGGGTCATCATCTTCAGAGGAGACTAATTATGATATCTGGGATGGTTTTGATGATGAACCTGCTTGGCTTGGGCGTCTCTTGGGTCCTATTAATGATCACTGTGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCGGAGGTTTATTTTGCTAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGAGCATTGAAGTGCACTCGCTGTGGGAGGCGAGGGGCAACCACTGGTTGTCGTGTCGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCAAGAGCAAGTGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCTTGCACAGATCATCGGCATCTCTTCCAACCTTGTGGTAATAAATATTTATCCTGGATAAAGAAGTTGAAGGCAAGGAAAATGATGTGGGAGATAAGGAAGCGATCAAATGAAGCTTGTAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGAGAAAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTGTACATTGGGGGTTCAGAATCTGCCAGTGAAAATTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCTGTTGTATGAAAGAAGTTGTTATTTTACCTCTGCTATATCCTGAGCTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTCTTGCATGGGCATCCTGGAACTGGGAAAACCTTGGTGGTCCGGGCATTGATAGGTGCATGTTCCCGTGGTGATAAGCGGGTTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAGTATGTTGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGGCTGGCACCCTGCCGCACTAGGCAGCAAGATCAGACGCATAGCTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCAGTTGTGGTCATAGGTGCGACAAACTGTCCTGAATCTGTTGATCCAGCACTTAGGCGCCCTGGTAGATTTGATCGGGAAATTTATTTTCCATTACCATCAATTGAGGACAGAGCTTCCATTCTCTCACTTCACACCCAGAAGTGGCCAAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGAAAAACATCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCGGCGATGAATGCGTTGAAGAGGAATTTCCCTTTGCAAGAAGTCCTGTCTTTAGCTGCTGAAGAAAAACATTCTGGTTCTAAGCACATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCTTATTTTTCGTCCCCACTACCTTGCTCCCGGAGAGATGCTGGAAATGCTGCTAATGATGTAGTATGCTACCCTCTTCCCATCCAACTTATTCCTTGTTTATTGCAGCCATTATGCACTCTTCTTGTATCTCTTTATCTTGATGAACGTCTATGGTTACCACTTCCCATATCTAAAGCTGCAACAGTGATAAAGGATGTCATGATTTCTGCTCTAGACAAAAAGCAAAAGCCTTCTGATCACTGGTGGTTGCACATGGATGATTTTCTTCAAGAAACAAACATTGTTTATGAGTTAAAGAGAAACCTTACTTGTTCTGGCATTTTATCTGCCAACGATGGCATTGCTGGTTCTTTTGATACTGTGGATGATGCCAATAATAACAGCTTGAAGTTTGAATCTTCCACAAGGAACCATCTTGGCATGCATAGTGGTTTATGTGCATTGACCAACAAATCAGGATTTCGGATACTAATATCTGGAAATTCACGATCTGGCCAGAGACATCTTGCTTCTTCCCTTCTTCACTGCTTTATTGGTAATATTGAAGTGCAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGTAGTGGTGCAAGGGATTGGTCAGATACTAATGAAATGTGCTAGCAGGCAATCTTGCATAGTATTCTTGCCAAGAATTGATTTATGGGCTGTGGAGAAACATTTCCAAATTGCTGAAAGGATAGATTCGTGTTTAACAATGGGCAAGTCTTGTTTCACACCAAACGAAGTTGTTCAGAAGGAAAATGACATTAGTAATGAGAAAAACTCAACTGAGATGACCAAAGGCCAAGCCAACACAAAGGCTTCATATGCCTGGATGTCATTTATTGAGCAGGTGGAATCCATTGATGTATCGACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACAGAACTTCCGTGCAAAGTAAGAGAATTCTTCAAGAGTTACCAATCTAAAGATGGCCGATCAACTCCTTTGGAGCAGACAATTCCTCGATTCTCTGTGCAAATTGATGAGAATTTTGATCATGACATGGTGATCAATCTATCTGCACTAGAGCTATTGAGAATTGTAGTTGAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGTTCATATGGGTTCCCAAAAGGGCAGAAGTTATAAATCAATTGAAGTTTCTAAAGATAAGGAGGTATGCCAAAGAAAAGAAGATGGACCAGCTAATGATAAGAGGGAAATCCAACTTGAATCCTTTACCAAAGTTCCACCAACACCCAACAGCAAGTCAATGAAGGGAAAGTCAATCCTGTTATTAGCAATATCCACATTTGGCTATCAAATTCTTTTATACCCACATTTTACTGAACTTTGTTGGGTCACTTCAAAACTCGATGAAGGTCCTTGTACTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAATAATTCACACGACCAGGTGGCAGTATCTTGTAGTTCTGGTGGCACCAAAAGCAGAGAAGCATCTGGTCTGGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTACAAATCAGTTAGGGAAGTTTCCCTTGATGTAAGGAAGGTTCTCGAGATCTTAATTGAGAAAATCAATACCAGAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTGGAAGACATGGTCAACAACTGGGCTTACTCGTTGCTAAGTCTGGAGCAGGATTCCCCTGAGCATAAAATAAAGGCTATACCAGCAAGTGGTGGGCCATTAAACAGTCATCTCACACATGAAAATCACCAAACTGAAGGTGAGGACTGTCATTTAGTTGTTCCTGTAGATGGTAATGATTTGGAGACATTGGAGGGAAGTCAGAAGGAAATTCCTGCTGAAACAACTGGATGTCTTGCCTCTGATGACAAAAATGATAATGCAGACATTTTTGATTGTGATGATGGAAATGCTAGTTCTGAAGGACATCTACAGAACCATTCTTTTTCAGATAAGAATATCAACAACTCTATTGCTGCAAGCCAACCACTTTATCCATCCACAAGTCAGGAGAATGGTATTTTATTTGGACAATCTGAATTTGTAACTGCTGGAAATAATGAAGAGATGGATGGAGAACTGGGGATTTCAAAAGGCTTGAACAAATCCACGTGCACTCAATCTGTGGTCCCTTCTGAAAATGGACTCCACACTGCTTGCGAACCAAAGAAACACGATGTTGAGATTGGGAACATTAGGTCTGATCAGCCTCTTAGCTTGCCCTCTGTAGAGACCGGTGCTAAATCAAGTGATGTTAAATCTGATAAACAAGAGAATGCCCCAGACAGTAATGTCTCTTCAAGTAATGGCTGTGGCCCTGCTGAATCCGGGGTTATTTGCTTGTATCAATGTTGCCCTGCATGTCTCCACAGTCTGCATCATTTGACAAAGAAAATACTTGTTGAAAAGTGGGGTTTAAACAGTGACAAGTGGACAGCAGAAGATGTCCATGATGCTGTTGCATCATTATCTGTGGATCTTATTTCAGCAGTTAGAAAATGCTTTATGCCTGAAGATTTCATTGATTCATCAAATAAAACCTCAAGAAATGAAAAGCGTGGAACATCTCTCGACTGTTTGAAACTGAGCACGTGTAATAATGGAAACCAACGCAAGGATGTTGTGCCAGCTGAATGTGTTTCTCACTCAGCAAGCCAACATGCAACTGCAATGGAAGGTATGGTGCTGAATGAAGAATCATCCAAGCATGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTCATTTGGACCCAGACAAGGATGTCTCAGTTCACTGTAAATTTGAGAACTTGTGCCTTTGTTCTCTAAGAGAGTTGATAGTAATGAAAAAGCGCCCTTTTGATTAG 5613 0.429 MRSSPSSLGSSSRLGSRLRKKHKRLDAICEEEYTRNHGELNEDNELSEDNEDLNPDVGVRRSSRVRCAPVLLDASPAPPKKRRKVGKGGISRSVEGARRLGRKNKGSGGTWSSRLRSRVGNVGVRVKEETESPRGKRKLFEGMVRRRGDREVGRKEELGGLMPKVVKSKRPGRIKATKHEEGHEEDVSDGSLEESKSQEVEIVLSSGEESDSDSETESCGGDRMDDSDGNTSPVIGNEEGNLMDDSDGDVSPMIRNEEGDQMDDLDGNDPLMVGNEEKNLPNDLQIEECGGNAEPSPVEHLVKVDDQLESAKESKRVGDVAEQVDNKGSVGKEVDVNENVLKDANDGKEADVDENVLKDANVGRLDELKHASVDKRGHQRIKEGRRCGLCGGGSDGKPPKRLAQDNGESENEAYSGSSSSEETNYDIWDGFDDEPAWLGRLLGPINDHCGIARIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPCGNKYLSWIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSESASENSFQGWESVAGLKDVICCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACSRGDKRVAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNCPESVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTSGFAGADLQALCTQAAMNALKRNFPLQEVLSLAAEEKHSGSKHIPLPSFAVEERDWLEAYFSSPLPCSRRDAGNAANDVVCYPLPIQLIPCLLQPLCTLLVSLYLDERLWLPLPISKAATVIKDVMISALDKKQKPSDHWWLHMDDFLQETNIVYELKRNLTCSGILSANDGIAGSFDTVDDANNNSLKFESSTRNHLGMHSGLCALTNKSGFRILISGNSRSGQRHLASSLLHCFIGNIEVQKIDMATILQEGHGVVVQGIGQILMKCASRQSCIVFLPRIDLWAVEKHFQIAERIDSCLTMGKSCFTPNEVVQKENDISNEKNSTEMTKGQANTKASYAWMSFIEQVESIDVSTSLMILATSEVPYTELPCKVREFFKSYQSKDGRSTPLEQTIPRFSVQIDENFDHDMVINLSALELLRIVVEQLVQLIHQRSHVHMGSQKGRSYKSIEVSKDKEVCQRKEDGPANDKREIQLESFTKVPPTPNSKSMKGKSILLLAISTFGYQILLYPHFTELCWVTSKLDEGPCTDVSGPWRGWPFNSCIIRPNNSHDQVAVSCSSGGTKSREASGLVRGLIAVGLSAYRGVYKSVREVSLDVRKVLEILIEKINTRIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSPEHKIKAIPASGGPLNSHLTHENHQTEGEDCHLVVPVDGNDLETLEGSQKEIPAETTGCLASDDKNDNADIFDCDDGNASSEGHLQNHSFSDKNINNSIAASQPLYPSTSQENGILFGQSEFVTAGNNEEMDGELGISKGLNKSTCTQSVVPSENGLHTACEPKKHDVEIGNIRSDQPLSLPSVETGAKSSDVKSDKQENAPDSNVSSSNGCGPAESGVICLYQCCPACLHSLHHLTKKILVEKWGLNSDKWTAEDVHDAVASLSVDLISAVRKCFMPEDFIDSSNKTSRNEKRGTSLDCLKLSTCNNGNQRKDVVPAECVSHSASQHATAMEGMVLNEESSKHDLKFVFRDGVLVHLDPDKDVSVHCKFENLCLCSLRELIVMKKRPFD* 1871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1919 1870 MobiDBLite consensus disorder prediction 174 196 - -
Gso12g1919 1870 MobiDBLite consensus disorder prediction 1653 1691 - -
Gso12g1919 1870 MobiDBLite consensus disorder prediction 23 43 - -
Gso12g1919 1870 SMART AAA_5 658 799 IPR003593 -
Gso12g1919 1870 Pfam ATPase family associated with various cellular activities (AAA) 662 797 IPR003959 GO:0005524|GO:0016887
Gso12g1919 1870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 855 IPR027417 -
Gso12g1919 1870 MobiDBLite consensus disorder prediction 121 163 - -
Gso12g1919 1870 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 56 1866 - -
Gso12g1919 1870 ProSitePatterns AAA-protein family signature. 767 785 IPR003960 GO:0005524|GO:0016887
Gso12g1919 1870 MobiDBLite consensus disorder prediction 310 331 - -
Gso12g1919 1870 PANTHER AAA DOMAIN-CONTAINING 56 1866 IPR045199 -
Gso12g1919 1870 Gene3D - 623 797 IPR027417 -
Gso12g1919 1870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 538 IPR013083 -
Gso12g1919 1870 Gene3D - 798 863 - -
Gso12g1919 1870 ProSiteProfiles Extended PHD (ePHD) domain profile. 424 536 IPR034732 -
Gso12g1919 1870 MobiDBLite consensus disorder prediction 1 277 - -
Gso12g1919 1870 MobiDBLite consensus disorder prediction 388 422 - -
Gso12g1919 1870 Pfam AAA+ lid domain 823 855 IPR041569 -
Gso12g1919 1870 MobiDBLite consensus disorder prediction 408 422 - -
Gso12g1919 1870 Pfam PHD-like zinc-binding domain 457 536 - -
Gso12g1919 1870 CDD AAA 656 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1919 Gso-Chr12 43102389 43110808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1919 624 859 Calmodulin-binding Proteins AT3G56690 39.916 3.54e-43 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1919 - - gmx:100817519 3670.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1919 12 43102389 43110808 Gso11g2937 11 45127755 45135689 GST