Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1916 ATGGCCCCAAGAGACAGCCGAGCCACCGCGTTCGCCGGCCCAGGCCCATCACCGGCCCACAAAGAGATCCGCTACCGAGGCGTCCGGAAACGCCCCTGGGGCCGCTACGCTGCCGAGATCCGTGACCCCGGCAAGAAAACGCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCTCGCGCATACGACACCGCCGCGCGTGAGTTTCGCGGTGCCAAGGCCAAGACTAATTTTCCGACACCTTCGGAACTCATCCTTAACAACAACATTCGTAGTCCCAGCCAGAGCAGCACCCTCGACTCTTCCTCTCCCCCGTCACCGCCACCGCCGCTTGACCTTACCCTAACCCCTCTCTCCGTGGCCGCCGCCGTCTTCCCGGTGGCTCGTCCGGTTCTATTTTTTGACGCGTTCGCGCGTGCGGACGCCATGATCGCCGTCTCCCGCCGCGAGACGTGCGGCTTCGAGCGCCCCGCCGCTGATTTCCGCCGTAACGACTCCGATTCCGATTACAACCGCCGCGTGCTCCTGGATCTTGACCTGAACGTGCCTCCTCTCCCTGAGGTTGCCTGA 576 0.6476 MAPRDSRATAFAGPGPSPAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELILNNNIRSPSQSSTLDSSSPPSPPPPLDLTLTPLSVAAAVFPVARPVLFFDAFARADAMIAVSRRETCGFERPAADFRRNDSDSDYNRRVLLDLDLNVPPLPEVA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1916 191 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Gso12g1916 191 MobiDBLite consensus disorder prediction 82 103 - -
Gso12g1916 191 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Gso12g1916 191 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Gso12g1916 191 PANTHER ERF FAMILY PROTEIN 1 118 - -
Gso12g1916 191 MobiDBLite consensus disorder prediction 80 113 - -
Gso12g1916 191 MobiDBLite consensus disorder prediction 1 26 - -
Gso12g1916 191 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Gso12g1916 191 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Gso12g1916 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 118 - -
Gso12g1916 191 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Gso12g1916 191 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Gso12g1916 191 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1916 Gso-Chr12 43070216 43071272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1916 21 137 AP2-EREBP Transcription Factor Family AT3G15210 65.909 6.99e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g1916 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1916 K09286 - gmx:100500601 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1916 12 43070216 43071272 Gso11g2944 11 45175777 45176795 GST