Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1915 ATGGACCACACCGAAGCTCACTTGCCACCTGGTTTTCGGTTCCACCCAACTGATGAGGAGCTCATAACTTACTACCTTCTCAAGAAGGTTCTTGACAGCACCTTCACAGGTAGAGCCATAGCTGAAGTTGATCTCAACAAGAGTGAGCCATGGGAGCTCCCTGAGAAAGCTAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGAAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGGTACTGGAAAGCCACAGGGAAAGATAGAGAGATTTACAGCTCCAAAACTTGTTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTAGAGCTCCAAAGGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCGAGGATGAGTGGGTCATATCACGTGTGTTTCGGAAGAGTAACACCACACCGATCACCAATGGAGGCTCCACCATGTCCGCTTCTACTAACTCCAAGAAGACAAGAATTAACAACACCACCTCTCTTATCCATGAACCAAGTTCACCCTCTTCAGTTTTCCTTCCACCTCTTCTAGACTCTTCTCCCTACACCAACACCACCACCAACACCTTCACCGACCATCACAATAGTTCTTATGATAGTGCCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCTGCAGCAACAGCTGTTGTCTCCCCCAACAACAACTTCAACAATGCAAGCTTCGACCTTCCACCTTCTCAGCCTCTTGCAACCGACCCTTTTGCAAGGTTTCAGAGAAACGCTGGTCTTTCTGCTTTTCCAAGTTTGAGGTCTCTACAAGACAACCTTCAGCTACCTTTCTTCTTCTCCACGGCGGCGGCGCCTCCCTTCTCCGGCGGAGTCTCCGGCGACTTCCTCAGCTGGCCAGTGCCGGATGATGGTGTTTCCAACATGCCACTGGGCGTGTCGGAGCTTGATTGCATGTGGGGCTACTAA 1032 0.4932 MDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSEDEWVISRVFRKSNTTPITNGGSTMSASTNSKKTRINNTTSLIHEPSSPSSVFLPPLLDSSPYTNTTTNTFTDHHNSSYDSATKKEHVSCFSTIAAATAVVSPNNNFNNASFDLPPSQPLATDPFARFQRNAGLSAFPSLRSLQDNLQLPFFFSTAAAPPFSGGVSGDFLSWPVPDDGVSNMPLGVSELDCMWGY* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1915 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 313 - -
Gso12g1915 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 1 313 - -
Gso12g1915 343 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Gso12g1915 343 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Gso12g1915 343 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Gso12g1915 343 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1915 Gso-Chr12 43049769 43052844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1915 7 343 NAC Transcription Factor Family AT5G53950 54.032 5.69e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1915 NAM 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1915 - - gmx:100815574 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1915 12 43049769 43052844 Gso11g2945 11 45197469 45200259 GST