LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g1913	ATGGCCGATGTGGCAGGTCTAGTTGAGGCATCGGGATCCAGATTCAGCTCATTGGAGCTTATTGGGCAGGGATCATTCGGAGACGTCTATAAAGCATTTGACAGGGAGCTCAACAAACTAGTCGCCATCAAAGTAATTGACTTGGAAGAATCAGAGGATGAAATTGATGATATCCAGAAGGAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTAATCCAATCAGGTCCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACACAGTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAGAATACAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCGCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGCTAGATGATCATTTTTCTCGTCCATTGAAAGAATTTGTGTCATTGTGCTTAAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATCCGGAATGCTAGGAAGAGTTCAAAGCTTTCAGAAAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGATGAGGAGACACCCAGAAATGGTCCAAGTGGGATGGGGGAGGCATCAGGTACTGTAAAGGTGGCAAGAGATTTAAGAGGTGAAGAAAATAATCGACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTTAGAGATAAGATAACTGAAGTTTCACATAATCAGCTTACTCAGCGAAAAGCTCCACAGAGTGGCTATCAAGGGGGATCTGTCAATAGAAGTGCACTTAATGAGTCACTTGAAAGTTCCTTTGGAAGAGATCTTAGAGTTCCCCACCATGATGAGCATCTGGATAATCACCTTGAAGATGATGAATTATCTGGGAATGGATCAGGAACTGTTGTTATTCGATCTCCAAAAGGATCAAGGTCATCTGCGTTTCGTGACCAGAGCTCTCAGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGTCTCGACTGGGACTTAATGACAGAAATTCAAATGCCTCAATGGAAGATAGTGCAGCAAATCTTGCTGAGGCAAAGGCTGCTATCCTGAGGAAATCAAATGCTCGAGAGAAACTTGCCCGAGGAAAAATCAACAATGATAGACAGGAAAGCAAAAGAGATCAAAAGGCTAGTAGCTCTGATTCTTCAAGACCACATGGTGAATATGATGCACACAAGGGCATGTTAAGATCACATCATGCTAGTGATGGCGAAGAAAGTGCTAAAATAATGTCATCATCGGTGCCATTATCTGTTTTACTTATTCCTTCATTAAAAGAGGCTATTGCTGATGATCCAGAACTCGTGAGGGCAGTTATCAATTCTTTAATAAACATGGAGGGTACAAAACCTAAATCCTGTGATGTTTTTGTCAAAAAGTTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGCAGGGACTGGCAGACCAACTATTCAGCAAGACCAAGTCAGCTCAAGAAACCCGAAATGCAGAGGCTGATAACAGGAAGAAACAACAAAACAAGGAACATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACGGGATCTAAACCCATCTTGA	2088	0.4224	MADVAGLVEASGSRFSSLELIGQGSFGDVYKAFDRELNKLVAIKVIDLEESEDEIDDIQKEISVLSQCRCPYITEYYGSYLNQTKLWIIMEYMAGGSVADLIQSGPPLDEMSIACILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPLKEFVSLCLKKVPAERPSAKELLKDRFIRNARKSSKLSERIRERPKYQIKEDEETPRNGPSGMGEASGTVKVARDLRGEENNRPSDQGKTLKSAGWDFSIGGSQGTGTFRNVSRPPQFRDKITEVSHNQLTQRKAPQSGYQGGSVNRSALNESLESSFGRDLRVPHHDEHLDNHLEDDELSGNGSGTVVIRSPKGSRSSAFRDQSSQSSSSYASFEDASSSGTVVLRGQHDESDSPQTPRSRLGLNDRNSNASMEDSAANLAEAKAAILRKSNAREKLARGKINNDRQESKRDQKASSSDSSRPHGEYDAHKGMLRSHHASDGEESAKIMSSSVPLSVLLIPSLKEAIADDPELVRAVINSLINMEGTKPKSCDVFVKKLLQRLASSKEDSLKDLQGLADQLFSKTKSAQETRNAEADNRKKQQNKEHNSNSNLSPLARFLLSRWQGQTSRDLNPS*	696

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso12g1913	695	MobiDBLite	consensus disorder prediction	274	495	-	-
Gso12g1913	695	Pfam	Protein kinase domain	16	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso12g1913	695	MobiDBLite	consensus disorder prediction	311	325	-	-
Gso12g1913	695	MobiDBLite	consensus disorder prediction	512	564	-	-
Gso12g1913	695	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	1	693	-	-
Gso12g1913	695	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
Gso12g1913	695	MobiDBLite	consensus disorder prediction	361	394	-	-
Gso12g1913	695	CDD	STKc_MST3_like	13	287	-	-
Gso12g1913	695	ProSiteProfiles	Protein kinase domain profile.	15	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso12g1913	695	MobiDBLite	consensus disorder prediction	512	567	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g1913	Gso-Chr12	43019163	43030163	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g1913	1	692	MAP Kinase Kinase Kinase Kinase	AT3G15220	66.429	0.0	873

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-YSK	Gso12g1913		Pkinase	1.2e-67	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g1913	K08838		-	gmx:100815042	1306.2

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g1913	12	43019163	43030163	Gso11g2946	11	45220940	45232258	GST

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