Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1908 ATGGTGCTGTTAAGATGTTTCTCAGTGACACTTTTGCAGTGGTGTTTCTTGGCTTGCTTACTTTGCTTGTCACTAGGGCTTAATAATAATAATAATCAAGCCCTATCTTGTGACCCTCATGATTTATCAGCTCTGAAGGAGTTTGCTGGCAACCTTACAAGTGGCTCTATCATCACAGCATGGTCCAATGACACTGTCTGCTGCAATTGGCTTGGAGTTGTTTGTGCTAATGTGACTGGTGCTGCTGGTGGAACAGTGGCTAGTAGAGTGACCAAGTTGATCCTTCCCGAAATGGGTCTCAATGGTACAATTTCACCCTCTTTGGCACAGCTAGATCAGCTCAATTTGCTGAATCTTTCATTCAATCATCTTAAGGGTGTTTTGCCTGTGGAGTTCTCCAAATTGAAGCTGTTGAAGTATCTTGATGTGAGCCATAACATGCTGTCTGGACCTGCTGCTGGAGCTCTTTCTGGTTTGCAATCCATTGAAGTGTTGAATATTTCTAGCAATTTACTTACTGGAGCTCTCTTCCCTTTTGGGGAATTCCCTCATCTCCTTGCTCTCAATGTGAGTAACAATTCATTCACTGGCAGATTCAGTTCACAAATTTGCAGGGCCCCCAAGGATCTTCACACCCTTGATTTGTCTGTAAATCATTTTGATGGTGGTCTTGAAGGCTTGGACAACTGCGCCACTTCTCTCCAAAGGCTGCATTTGGATTCCAATGCATTTGCTGGCTCTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGGAACTCACAGTCTGTGCCAACAATTTATCTGGCCAGTTAACCAAGCATCTAAGTAAGCTCTCTAACCTAAAAACTTTGGTGGTTTCTGGGAACAGGTTTTCTGGGGAATTCCCAAATGTGTTTGGGAACCTTTTGCAGCTAGAAGAATTACAAGCACATGCCAATTCATTTTCTGGACCCTTGCCTTCCACCTTGGCTTTATGCTCTAAGCTTAGGGTGCTTGATCTTAGAAATAATTCCTTGTCAGGGCCAATTGGTCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTTGACCTTGCTACTAATCATTTCATTGGACCCCTTCCAACTTCCCTGTCCTATTGCCGAGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAACTGGTTCTGTCCCTGAAAACTATGCCAACCTCACTTCACTTTTGTTTGTATCCTTCTCAAACAACAGCATTGAGAACTTATCTGGGGCAGTGTCTGTTCTGCAGCAGTGCAAAAATCTCACCACCCTTATCCTCTCTAAGAATTTCCATGGTGAGGAAATTTCAGAAAGTGTGACCGTAGGATTTGAGAGTCTTATGATTTTAGCACTTGGGAATTGTGGTCTTAAAGGCCATATTCCTTCTTGGTTATTCAATTGCAGGAAGTTGGCAGTTCTTGATTTGTCTTGGAACCATTTGAATGGTAGTGTTCCTTCTTGGATTGGTCAGATGGACAGCTTGTTCTATTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAATAGGTCTGACAGAGTTGAAGGGCCTCATGTGTGCAAACTGTAATAGAGAAAATCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGTAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTCTCTTGAGCAATAACATATTGAGTGGAAATATATGGCCTGAAATTGGTCAATTGAAAGCACTGCATGCCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACAATTTCAGAGATGGAGAACTTGGAATCATTAGATTTGTCTTATAATGATCTTTCTGGAGAAATTCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCACATAATCACTTAGATGGACCAATTCCAACTGGAGGGCAGTTTTTAAGCTTCCCTAGTTCAAGTTTCGAGGGCAACCAGGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACAAGTCCCAACAATTCTTCTGGTTCTTCCAAAAAACGTGGTAGAAGCAATGTCCTTGGCATTACAATCAGTATAGGGATTGGGCTTGCACTGCTTCTTGCAATTATTCTGCTAAGGTTGTCAAAGAGGAATGATGATAAGTCTATGGATAACTTTGATGAGGAACTCAATAGCAGGCCACACAGGTCATCCGAAGCACTTGTTTCCTCAAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCAATCAAGAGACTTTCAGGGGACTGTGGCCAGATGGAACGTGAATTCCAAGCTGAAGTAGAAGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGTTATTGTCGGCATGGCAATGAAAGATTGCTAATATACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTCGATGAAAGTTCAGCTCTCAAATGGGATTCTAGACTCAAGATTGCACAAGGCGCTGCTCGTGGATTAGCTTACTTGCATAAGGGGTGTGAACCATTCATAGTGCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCGAGGCTACTTCAACCATATGACACTCATGTCACAACAGACTTGGTAGGAACTTTAGGATACATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTTAGGGGTGATGTTTATAGTTTTGGCGTTGTTCTTCTTGAGCTTCTTACTGGTAGAAGGCCTGTGGAAGTCATCAAGGGGAAAAACTGCAGGAATCTGATGTCTTGGGTGTATCAGATGAAATCCGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCATGAGAAACAGCTATTGGAGGTGCTTGCCATTGCTTGTAAATGCCTAAACCAAGATCCTAGGCAGAGACCTTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGCTGGTTCTCAACAGTGA 3177 0.4174 MVLLRCFSVTLLQWCFLACLLCLSLGLNNNNNQALSCDPHDLSALKEFAGNLTSGSIITAWSNDTVCCNWLGVVCANVTGAAGGTVASRVTKLILPEMGLNGTISPSLAQLDQLNLLNLSFNHLKGVLPVEFSKLKLLKYLDVSHNMLSGPAAGALSGLQSIEVLNISSNLLTGALFPFGEFPHLLALNVSNNSFTGRFSSQICRAPKDLHTLDLSVNHFDGGLEGLDNCATSLQRLHLDSNAFAGSLPDSLYSMSALEELTVCANNLSGQLTKHLSKLSNLKTLVVSGNRFSGEFPNVFGNLLQLEELQAHANSFSGPLPSTLALCSKLRVLDLRNNSLSGPIGLNFTGLSNLQTLDLATNHFIGPLPTSLSYCRELKVLSLARNGLTGSVPENYANLTSLLFVSFSNNSIENLSGAVSVLQQCKNLTTLILSKNFHGEEISESVTVGFESLMILALGNCGLKGHIPSWLFNCRKLAVLDLSWNHLNGSVPSWIGQMDSLFYLDFSNNSLTGEIPIGLTELKGLMCANCNRENLAAFAFIPLFVKRNTSVSGLQYNQASSFPPSILLSNNILSGNIWPEIGQLKALHALDLSRNNITGTIPSTISEMENLESLDLSYNDLSGEIPPSFNNLTFLSKFSVAHNHLDGPIPTGGQFLSFPSSSFEGNQGLCREIDSPCKIVNNTSPNNSSGSSKKRGRSNVLGITISIGIGLALLLAIILLRLSKRNDDKSMDNFDEELNSRPHRSSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNERLLIYSYLENGSLDYWLHECVDESSALKWDSRLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLMSWVYQMKSENKEQEIFDPAIWHKDHEKQLLEVLAIACKCLNQDPRQRPSIEVVVSWLDSVRFAGSQQ* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1908 1058 PRINTS Leucine-rich repeat signature 587 600 - -
Gso12g1908 1058 PRINTS Leucine-rich repeat signature 608 621 - -
Gso12g1908 1058 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Gso12g1908 1058 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Gso12g1908 1058 Gene3D Ribonuclease Inhibitor 369 684 IPR032675 -
Gso12g1908 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 455 525 - -
Gso12g1908 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 566 625 - -
Gso12g1908 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 288 444 - -
Gso12g1908 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 622 1051 - -
Gso12g1908 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 169 - -
Gso12g1908 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 179 288 - -
Gso12g1908 1058 SUPERFAMILY RNI-like 232 534 - -
Gso12g1908 1058 SUPERFAMILY Protein kinase-like (PK-like) 759 1048 IPR011009 -
Gso12g1908 1058 SMART LRR_typ_2 232 255 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 135 158 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 498 522 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 584 607 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 111 134 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 399 422 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 608 631 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 279 302 IPR003591 -
Gso12g1908 1058 SMART LRR_typ_2 351 375 IPR003591 -
Gso12g1908 1058 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1908 1058 Gene3D Ribonuclease Inhibitor 270 368 IPR032675 -
Gso12g1908 1058 ProSiteProfiles Protein kinase domain profile. 777 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1908 1058 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Gso12g1908 1058 Pfam Leucine rich repeat 586 645 IPR001611 GO:0005515
Gso12g1908 1058 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Gso12g1908 1058 SUPERFAMILY L domain-like 38 317 - -
Gso12g1908 1058 CDD STKc_IRAK 783 1049 - -
Gso12g1908 1058 Gene3D Transferase(Phosphotransferase) domain 1 853 1055 - -
Gso12g1908 1058 Gene3D Phosphorylase Kinase; domain 1 738 852 - -
Gso12g1908 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 622 1051 - -
Gso12g1908 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 35 169 - -
Gso12g1908 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 566 625 - -
Gso12g1908 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 288 444 - -
Gso12g1908 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 455 525 - -
Gso12g1908 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 179 288 - -
Gso12g1908 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Gso12g1908 1058 ProSiteProfiles Leucine-rich repeat profile. 610 632 IPR001611 GO:0005515
Gso12g1908 1058 SMART serkin_6 777 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1908 1058 SUPERFAMILY L domain-like 554 686 - -
Gso12g1908 1058 Gene3D Ribonuclease Inhibitor 36 269 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1908 Gso-Chr12 42958632 42962970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1908 10 537 Receptor kinase-like Gene Family AT1G55610 26.020 9.08e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso12g1908 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1908 - - gmx:100797812 2008.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1908 12 42958632 42962970 Gso11g2951 11 45286997 45291428 GST