Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1897 ATGGGTTGCATGTGTTGCAAGCCCTCTGCCATTGAAGATAGTAAGGAGAGTCCAAGGGAGCGTTTATCGAGCAAGGCTGTGTCAGACTTGCGTGTATCTAGAGGGGCTTCATCGAGGAGGGAGGAAGCGTTTCGGGTAAAGGATAGATATGATAACAATGATGGAAGAACTGCATTGATTGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGTGAGAGTTTTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCAACATCCAGGGATTGGTAGTGTTCCTAAGGCCATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGCTACCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGGTTGTTGCTTTGAAAAAAGTGAGATTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCTAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAACAACTTTTACGCGGACTTGATCACTGCCACAGCTGTGGTGTACTTCACCGTGACATTAAGGGTTCCAATCTTTTGATTGATAACAACGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAGCTCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCACCAGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCTGTGGATTTATGGAGTACAGGTTGCATACTTGCTGAGCTTTATGCTGGAAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAACCCTATAGGCGATGTGTTTCTGAAACATTCAAGGAGTTTCCTGCACCTGCAATAGAATTGATAGAGACCCTTTTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGAATAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTTCGGGATGAAGAAGCTAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGACATGATCTTGAGAGAAGAGGTGCTAGAGAATCACGAGCCATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAAGAGACAAGGGCAGGCCAATTCTCAGAGCAAGAGTGAGAAGTTTAACCCTCATCCCGAAGAAGTTGCTTCTGGGTTTCCCATTGATCCCCCTAGACCATCACAGGCTGCAGGATTAATTGCAGATCCCCCGGTTCATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCGGCATGGGCTAAAGCCGGGAAGAACCAGGACGATGCTCCAAAGATTTCAATGGTGGGTGACTTATCAACAGTATCGGGCTTAGTTGCAGCAAGGAGGAGTATGTTGTCTGACGATCGCAGAGAAAGGTCTGGATCATCACAAACAGTGGCCCCAAAACTAATAAACAGGTTCCCAGGATCCTTCAAAGAGGCTTCTGAGTCAATGATGCAACAGGATCAGAAGTATCATGCACATGTTCCTCAAAAGGAAGAAGGGAGAGGCAGCAGCAACAAAGACTCAAATCTTGTTGGTTATGGCTCCAAGGGCCATAAAATTCATCATTCTGGTCCTCTGCTAGTTCCATCAAGCAACCATGATCAGATGTTGAAGGACCATGACCGCCAAATCCAAGAGGTGGTTCGAAGAGCGCGGTTGGACAAGGCAAAGATGAGAAGACTCCAAACTGAGGGGAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2127 0.4542 MGCMCCKPSAIEDSKESPRERLSSKAVSDLRVSRGASSRREEAFRVKDRYDNNDGRTALIDKQGNGSVRVQGESFERKREKMEYAVAQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKVVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKEFPAPAIELIETLLSIDPADRGTSASALNSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDLERRGARESRAIPAPDANAELVLSMQKRQGQANSQSKSEKFNPHPEEVASGFPIDPPRPSQAAGLIADPPVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMVGDLSTVSGLVAARRSMLSDDRRERSGSSQTVAPKLINRFPGSFKEASESMMQQDQKYHAHVPQKEEGRGSSNKDSNLVGYGSKGHKIHHSGPLLVPSSNHDQMLKDHDRQIQEVVRRARLDKAKMRRLQTEGNQITNSLFVSGR* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1897 708 MobiDBLite consensus disorder prediction 1 47 - -
Gso12g1897 708 PANTHER CELL DIVISION PROTEIN KINASE 1 690 - -
Gso12g1897 708 MobiDBLite consensus disorder prediction 12 27 - -
Gso12g1897 708 MobiDBLite consensus disorder prediction 434 469 - -
Gso12g1897 708 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Gso12g1897 708 MobiDBLite consensus disorder prediction 421 510 - -
Gso12g1897 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gso12g1897 708 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1897 708 MobiDBLite consensus disorder prediction 483 498 - -
Gso12g1897 708 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1897 708 PANTHER CYCLIN-DEPENDENT KINASE 1 690 - -
Gso12g1897 708 CDD STKc_CDK9_like 131 415 - -
Gso12g1897 708 MobiDBLite consensus disorder prediction 579 668 - -
Gso12g1897 708 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Gso12g1897 708 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1897 708 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Gso12g1897 708 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1897 Gso-Chr12 42811407 42817884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1897 123 472 Core Cell Cycle Gene Families AT5G10270 51.639 6.19e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso12g1897 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1897 - - gmx:100792173 1428.69