Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1892 ATGGCCGAGTTCACAGAATTGTTTCCCTTGGGCGAACCATTTGATGGTTTGATGCACATGTATGTGTATGTCATCACATTTGATCTTCCAACCTTGTTCATTGTTCTATTCATACCCACAGTGTTATTCTTCATCTTGTATCAAGTTCTCAACGGTTTGTTCTTCTGGTTAATGGAAATGAGGCCAATTGAACATGATATTGAAGAGGGTATTACACATTTAGCCAATTATGGGGACTCTGTGCCATCTCACCATGTTACCATATTCCATGCCCTTGTGCATAGCAATTTGCATGCTTGGACATTGGTGACTGCATTTGAAGGAGTTTTTTATGAGAAAAGAGGACAAAGACTTAGAGCTTCCAAAAAATTGCCCCCTTTGGTGAACTATGGAATGCATGGTGTAACAAGAAGTTGTGGTGAATGTGCCATTTGCTTGGAAGAATTCGAAGTTGGCCAATTGTGTCAAGTTTTTCCCGAGTGCAAGCACATTTTTCATTCGGACTGCATAGACCACTGGTTGCAGAAGAAACTAACTTGTCCAATATGTCGTAGTAGTATATAG 564 0.4025 MAEFTELFPLGEPFDGLMHMYVYVITFDLPTLFIVLFIPTVLFFILYQVLNGLFFWLMEMRPIEHDIEEGITHLANYGDSVPSHHVTIFHALVHSNLHAWTLVTAFEGVFYEKRGQRLRASKKLPPLVNYGMHGVTRSCGECAICLEEFEVGQLCQVFPECKHIFHSDCIDHWLQKKLTCPICRSSI* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1892 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 187 IPR013083 -
Gso12g1892 187 Pfam Ring finger domain 141 184 IPR001841 -
Gso12g1892 187 PANTHER RING FINGER DOMAIN-CONTAINING 16 187 - -
Gso12g1892 187 SMART ring_2 142 183 IPR001841 -
Gso12g1892 187 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gso12g1892 187 SUPERFAMILY RING/U-box 141 187 - -
Gso12g1892 187 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 187 - -
Gso12g1892 187 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1892 Gso-Chr12 42753327 42753890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1892 29 187 C3H Transcription Factor Family AT1G53010 29.412 2.40e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1892 - - gmx:102660073 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1892 12 42753327 42753890 Gso11g2970 11 45510511 45511071 GST