Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1876 ATGAGCAAAGCCCTGGGAGCAACTACAGAAGAAGACGAAGAAGACGACCAACAACATCCACAACAAGATTGTTTCTACGACTCACACGACCGTTTACTTTCACTCTCTTCTTCATGCTCTTGTTCCAACTCCAACTCCGACAACGAAAACGACACCCAAGACCACCAAAACGACACCAGCCTCCCCAATTTCACCAACTACGACATATGGATCTCTCAACCCTCCTCCGTCTCCGAACGCCGCACGCGCCTTTTACTTTCCCTCGGACTCTCTTCCCTCACGCGCCCAAACCCTCGCGATCGCGCGTCCCCTCTCCGATCCATATCCGACACCACCGCAAACCCTAACAAGCCACCAAATCCAAAACCACCCCCACCGCCGCCGCCACCACCGATTGAAGAGCTGTGCACGATTCGAGATCTCGATAACGGGAAAGAGTTCGTCGTGAACGAATTGGAGAATCTGCGGGAGGTTGCCACGGGGCGGCAATTGACGATGGAGGAGTTTGAGATGACGGTGGGGCATTCTCCCATCGTTCAGGAACTGATGCGGCGGCAGAACGTTGAAGAGGCGAGCGTTGATTCCAATGCGGGTGGTTCTAAAGTGAAGAAGAAGGGGACGGGGTGGTTGAAGAGTATCAAGAGCGTGGCGAGTTCGGTGGCGGGGTATAGGGATCGCCGGAGTAGCGACGAGAGGGACACGTCGTCGGAGAAGGGCGGGAGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGAGGGAGGGGGCGCGTTTCACGGGCCGGAGAGGGTGAGGGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACTGCTTTGTACAAGAGTCAGGAGATTCAGGCGCATAGTGGGAGCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGGGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGAAAGGGGGAGTTGTTGTTGTTGGATAGGGAGAAGGGGGAGGATGGGAATGGGAATGTGGATATGTTTTTGGTGGTGAATGGGTCCCCCATGGCGGATGGGGAGAGGAAGAGGAAGGGGAGGTCGAGTGTGAGTAGGAAGTCCTTGAGCTTGGACCAGTTTGTGGTGCCGCAGACCGTGTTTGCGCTTACTGACAAACCAGTTTGCTCCTTCCAGGGACATCTTCATGATGTGCTTGACCTCTCATGGTCTAAAACTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGTTGTGGCATCTGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCATTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACGTCCGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCACGAATTCGGGTGGTTGATGGTGTTGATCTAGTTCATAAGTTTAAAGGCTTTCGGAATGCAACTAGTCCAATTTCAGCATCCCTCACGGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCCCATGTATTCATCTGGAAAAATGAAGCTGATTGCAGGCCAAACAGAAGTAAAGGTGTGACTGTCACACGATCATATGAGCATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCTGGTATGGGTGATGAATGGGACATGCAAGATACGTTTTCCGGAGAACAGCCCGAGATTGATAACCATGCTGATGAAGTCTCATCAGCCAACCATCCTCCTACCCCTGTAGAGGAAAACTTTGTTACTGAGGGTTCAAGATCTGCATCAGGTTATAGCAACAGTCCACGCCATGCAACCATTGCAAGTGCAACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTACAAGAACCCAAAGCCCTCGTGTCAGTATGGATTTCTCTAACGGGGTAAGTAAAAAAATGTCAGCCTGGGGTATGGTGATCGTAACTGCCGGCCTCCGAGGGGAAATTAGAACTTTCCAAAATTTTGGACTACCACTTCGGATATAA 2301 0.4933 MSKALGATTEEDEEDDQQHPQQDCFYDSHDRLLSLSSSCSCSNSNSDNENDTQDHQNDTSLPNFTNYDIWISQPSSVSERRTRLLLSLGLSSLTRPNPRDRASPLRSISDTTANPNKPPNPKPPPPPPPPPIEELCTIRDLDNGKEFVVNELENLREVATGRQLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNAGGSKVKKKGTGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQEGGGAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGNGNVDMFLVVNGSPMADGERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKTQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVFIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDEWDMQDTFSGEQPEIDNHADEVSSANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNSYFFDRISATWPEEKLLLATRTQSPRVSMDFSNGVSKKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1876 766 PANTHER WD REPEAT DOMAIN 44 14 97 IPR040324 -
Gso12g1876 766 PANTHER WD REPEAT DOMAIN 44 135 766 IPR040324 -
Gso12g1876 766 MobiDBLite consensus disorder prediction 116 132 - -
Gso12g1876 766 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 135 766 - -
Gso12g1876 766 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 14 97 - -
Gso12g1876 766 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 325 IPR001680 GO:0005515
Gso12g1876 766 Gene3D - 366 623 IPR015943 GO:0005515
Gso12g1876 766 SUPERFAMILY WD40 repeat-like 282 603 IPR036322 GO:0005515
Gso12g1876 766 MobiDBLite consensus disorder prediction 1 65 - -
Gso12g1876 766 MobiDBLite consensus disorder prediction 645 669 - -
Gso12g1876 766 MobiDBLite consensus disorder prediction 31 65 - -
Gso12g1876 766 MobiDBLite consensus disorder prediction 221 263 - -
Gso12g1876 766 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 317 - -
Gso12g1876 766 Pfam WD domain, G-beta repeat 283 315 IPR001680 GO:0005515
Gso12g1876 766 Pfam WD domain, G-beta repeat 428 465 IPR001680 GO:0005515
Gso12g1876 766 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Gso12g1876 766 PRINTS G protein beta WD-40 repeat signature 303 317 IPR020472 -
Gso12g1876 766 PRINTS G protein beta WD-40 repeat signature 410 424 IPR020472 -
Gso12g1876 766 PRINTS G protein beta WD-40 repeat signature 452 466 IPR020472 -
Gso12g1876 766 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 466 IPR001680 GO:0005515
Gso12g1876 766 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 426 - -
Gso12g1876 766 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 466 - -
Gso12g1876 766 Gene3D - 239 352 IPR015943 GO:0005515
Gso12g1876 766 MobiDBLite consensus disorder prediction 224 245 - -
Gso12g1876 766 MobiDBLite consensus disorder prediction 92 115 - -
Gso12g1876 766 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 432 IPR001680 GO:0005515
Gso12g1876 766 MobiDBLite consensus disorder prediction 92 132 - -
Gso12g1876 766 SMART WD40_4 385 423 IPR001680 GO:0005515
Gso12g1876 766 SMART WD40_4 468 506 IPR001680 GO:0005515
Gso12g1876 766 SMART WD40_4 559 600 IPR001680 GO:0005515
Gso12g1876 766 SMART WD40_4 513 558 IPR001680 GO:0005515
Gso12g1876 766 SMART WD40_4 426 465 IPR001680 GO:0005515
Gso12g1876 766 SMART WD40_4 277 316 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1876 Gso-Chr12 42591501 42597516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1876 380 597 U-box Gene Family AT1G04510 27.731 2.43e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1876 K20241 - gmx:100806654 1417.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1876 12 42591501 42597516 Gso11g2987 11 45673374 45679034 GST