Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1871 ATGGGAGTTCCAGAGAAAGACCCTCTTTCCCAATTGAGTTTGCCTCCTGGTTTTCGGTTTTACCCCACCGACGAGGAGCTCCTCGTTCAGTATCTATGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAGTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACAGGAAATACCCTAACGGGTCCCGACCCAACAGAGTAGCCGGGTCGGGTTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCCCTCGTTTTCTACATTGGCAAAGCCCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAGCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAGAAGGCGGTGCAAAACGGCGTCGTTCCGAGCAACGAGCACACTCAATACAGCAACGGTTCCTCTTCTTCTTCTTCGTCACAACTCGACGACGTTCTGGAATCGCTGCCAGCGATTGATGAACGGTGTTTCCCGATGCCACGTGTCAACACGCTGCAGCAACAGCAGCACGAGGAGAAGATCAATGTTCAGAACTTGGGTGAAGGGGGGTTAATGGATTGGACCAACCCTTCGGTTCTGAATTCGGTCGTTGATTTCGTATCGGGGAATAATAATCATAATCAAGTGGTGCAGGACCAGACGCAAGGCATGGTGAACTACAACGCGTGCAATGACCTCTATGTCCCTACGTTATGCCATGTGGGCACGTCAGTTCCGCAAAAGATGGAGGAAGAGGTGCAAAGCGGCGTGAGAAACCAACGGGTCCAGAACAATTCCTGGTTTCTTCAGAATGATTTCACACAGGGGTTTCAGAATTCGGTTGACACGTCTGGGTTTAAGTACCCGGTTCAACCGGTGGGGTTCGGGTTCAGGAATTGA 1038 0.501 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKNTGTKLDDWVLCRIYKKNSSAQKAVQNGVVPSNEHTQYSNGSSSSSSSQLDDVLESLPAIDERCFPMPRVNTLQQQQHEEKINVQNLGEGGLMDWTNPSVLNSVVDFVSGNNNHNQVVQDQTQGMVNYNACNDLYVPTLCHVGTSVPQKMEEEVQSGVRNQRVQNNSWFLQNDFTQGFQNSVDTSGFKYPVQPVGFGFRN* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1871 345 PANTHER NAC TRANSCRIPTION FACTOR 56 1 320 - -
Gso12g1871 345 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gso12g1871 345 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Gso12g1871 345 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Gso12g1871 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 320 - -
Gso12g1871 345 MobiDBLite consensus disorder prediction 168 197 - -
Gso12g1871 345 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1871 Gso-Chr12 42507540 42509585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1871 1 279 NAC Transcription Factor Family AT3G15500 63.103 8.94e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1871 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1871 - - gmx:732651 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1871 12 42507540 42509585 Gso11g2992 11 45752394 45754063 GST