Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1870 ATGGGGAGCACCGACTCATCAAGCGGTTCACAACAACCGAACCTGCCACCTGGGTTTCGGTTCCACCCCACCGATGAAGAGCTTGTGGTTCACTACCTCAAGAAAAAAACAGCTTCTGCTCCTCTTCCGGTAGCCATAATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCGCGTTTGGGGAGCAGGAGTGGTATTTCTTTACACCGAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCCACATCAGGGTATTGGAAGGCTACTGGGACTGATAAGCCTGTGTTGACCTCTGGTGGGACCCAAAAGGTTGGGGTGAAGAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGAAAGGGAAGATTCAATGGATGACATGATTGGAGGGATTCCTCCATCCATCAACGTGGGCCACATGAGTGCGAGGTTTCATCATCTTTCAAAGATGACCACAGCCTACAACAGCGGTGCAATGTTGGAAAATGAACACAACTTGTTGGAAGGGATGATGATAGGTAATAACAACGGAGGGATGAACACAACTACTACTGCTACTACTACGCCTGGTGCCATGTCATCTCACTTAGGGGGATCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCAAACACTTCTAAGAGAACACTCTCATCACTGTATTGGAACGATGAGGATGTGACAGGAACATCATCTTCGAACAGAAGGTTCAATTTGGAAAGTGGGGACAATAATAATCATGGAAGTGTTGTGAGGGCTGATCAAGAGAATGGCACTGCTTCCTCTATTGCCACTCTGCTTAATCAACTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGGTCAATAGGCGATGGACTTCTAAGAACAACATACCAAATACCAGGAATGAATTGGTATGCTTAG 1128 0.4814 MGSTDSSSGSQQPNLPPGFRFHPTDEELVVHYLKKKTASAPLPVAIIAEVDLYKFDPWELPAKAAFGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPPGCDLGNKKNTLRLDDWVLCRIYKKSNTHRSPMEHEREDSMDDMIGGIPPSINVGHMSARFHHLSKMTTAYNSGAMLENEHNLLEGMMIGNNNGGMNTTTTATTTPGAMSSHLGGSKAELSFVPTMTHSSNTSKRTLSSLYWNDEDVTGTSSSNRRFNLESGDNNNHGSVVRADQENGTASSIATLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1870 375 SUPERFAMILY NAC domain 9 177 IPR036093 GO:0003677|GO:0006355
Gso12g1870 375 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g1870 375 MobiDBLite consensus disorder prediction 300 323 - -
Gso12g1870 375 ProSiteProfiles NAC domain profile. 15 177 IPR003441 GO:0003677|GO:0006355
Gso12g1870 375 Gene3D NAC domain 24 182 IPR036093 GO:0003677|GO:0006355
Gso12g1870 375 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 351 - -
Gso12g1870 375 MobiDBLite consensus disorder prediction 1 17 - -
Gso12g1870 375 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Gso12g1870 375 PANTHER NAC TRANSCRIPTION FACTOR 56 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1870 Gso-Chr12 42484301 42486573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1870 19 375 NAC Transcription Factor Family AT3G15510 53.067 5.94e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1870 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1870 - - gmx:100784578 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1870 12 42484301 42486573 Gso11g2993 11 45775995 45778347 GST