Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1863 ATGGCATTTGAATTACCTTCCATTCCAAGCCATGGCTCCACTAGCACAGTTCTATTTGTTATTGCTGTCTCCATCTTGTTAGTGTTATTTGGTTCACTTTGTTATTGCTTGGTAGCTCGCAGGTCCAAGGGAACATATCACAATGACAAGCCATCAAATAGCTCTGTTACTTGTAGAGTGTTCACATTCCAAGAGGTCCAAGAAGCAACCAACAACTTTCAAGAGGATTTTCTTCTTGGCATTGGTGGGTTTGGGAATGTCTACAAGGGAAAACTTGAAAATGGGACAAAAGTAGCAGTTAAAAGAGCCACCCCTCTATCAACACAAGGCTTATCCGAATTCCAAAACGAGATTCAATTGTTATCCAAACTCCAACACCCTCACATCGTGTCTCTTGTTGGCTATTGCCATGAAGGGGAGGAAATGATTCTTGTGTATGAATACATGGCCAATGGACCCTTAAGCAAATGGTTCTATGAACAATGTGAGTCACCACTCTCTTGGAAGCAACGACTTGAAATTTGCATTGGGGCTGCTAAAGGGCTTCACTATCTCCACACTAGTTCAGTTGAAGGCATAATCCATAGAGATGTGAAAACTGCCAACATTCTCCTGGACGAGAATTTTGTGGCCAAAGTAGCAGATTTTGGTATATCAAAGAAAGGGTCTTCTCTTGATGAGAGCCTTGTGGTCACTAGTGTGAAGGGCACTTTTGGTTACATAGATCCTGAGTACTTCAGAACAAGCCATCTAACTGAGAAATCAGATGTGTACTCATTTGGGGTGGTTCTAATAGAAGTAATCTCTGGTAGGCCTGCTTTAGACCATGGTCTTCCCACAGAGAAAATTAATGTAGCAACATGGGCAATGAATTCTGAAGTAAAGGGTCAGTTACATCAGATCATGGACCCAAATATAGTTGGCAAAGCGAGAGTTTCTTCTCTTAACAAGGTTTGGGAGGTGGCTAAAAGGTGCCTGGCTGAGAATAGGATCAATAGACCACCAATTGGTTTTGTCTTGTGTTGTTTGGAAGATGCTTTGCACCTTGAACTCAGCAACATAGCTGACGAGGAAAATTCATTTTTAAATTGTGAAATGTCAGAAGTGAAAGTGAGCTAG 1119 0.4164 MAFELPSIPSHGSTSTVLFVIAVSILLVLFGSLCYCLVARRSKGTYHNDKPSNSSVTCRVFTFQEVQEATNNFQEDFLLGIGGFGNVYKGKLENGTKVAVKRATPLSTQGLSEFQNEIQLLSKLQHPHIVSLVGYCHEGEEMILVYEYMANGPLSKWFYEQCESPLSWKQRLEICIGAAKGLHYLHTSSVEGIIHRDVKTANILLDENFVAKVADFGISKKGSSLDESLVVTSVKGTFGYIDPEYFRTSHLTEKSDVYSFGVVLIEVISGRPALDHGLPTEKINVATWAMNSEVKGQLHQIMDPNIVGKARVSSLNKVWEVAKRCLAENRINRPPIGFVLCCLEDALHLELSNIADEENSFLNCEMSEVKVS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1863 372 ProSiteProfiles Protein kinase domain profile. 73 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1863 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Gso12g1863 372 Gene3D Transferase(Phosphotransferase) domain 1 149 367 - -
Gso12g1863 372 Gene3D Phosphorylase Kinase; domain 1 44 148 - -
Gso12g1863 372 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Gso12g1863 372 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 58 356 - -
Gso12g1863 372 SMART serkin_6 73 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1863 372 SUPERFAMILY Protein kinase-like (PK-like) 49 343 IPR011009 -
Gso12g1863 372 CDD STKc_IRAK 79 340 - -
Gso12g1863 372 Pfam Protein tyrosine and serine/threonine kinase 79 336 IPR001245 GO:0004672|GO:0006468
Gso12g1863 372 PANTHER OS07G0166700 PROTEIN 58 356 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1863 Gso-Chr12 42392837 42394064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1863 24 357 Receptor kinase-like Gene Family AT3G46290 51.966 3.51e-121 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso12g1863 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1863 - - gmx:102659547 739.569