Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1858 ATGAACAGCAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGGCTTCTTAAATTACCAGAGAATAGGGGATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGATCAAGTTGCATTCATCCAATCAATGGGAAACGAAAAAGCAAATAGTTTCTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGATTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTGAGGGAAGAGAAAAGTCCTTCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTTATGCTGCTGTTTCTGAAAATAAATTTGAGGAAAGGAAGAAAATCCAACCATCAGATGCAATTTCTACCACAAGAATTAATGTTCCTGCTCCTCCCAGAGCATCTGAGCAGGTAACTCCTATTACCAAACCTCAGCATGTGGAGAAAGTGGAACCAGTAGCACCACAACCACGAGCTCCCTCACCACCAGCTTCCCAACCACAAGCTGAAACATCAAAGCAGGCTACAGACACAGTTCAAAATATCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCTAATGAAAATGGCTCTGAGGCAGCTGGTACAACTACTGATGATAATCACTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCGCTGAAAGCAGCTGATAGTACTCCCGTGTCTGCATCTGGAATTGAGGATCTTTTCAAAGATTTATCTCCTGTGACTCCAAGCTTGACTCCAGAAAAACCACAAAAAGATGTGAAAAATGATATCATGCGCCTCTTTGAGAAGGCCAATATAGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGGCATGCTAGCACACCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTACTGGTGGGGATCCCAGGTATGCTGCTAACATACAACAACCTAGGCCACCAAATGTTCCTATCCAAAGTTGGCCAGCTACTGGCTACTCAATTCCTGGAGTAATGCCCATGGGTGGTCAGGGAGACCTGCAAAAACTTATGCAGGGTCAGCCTAGGAACATGACCCCAGCACACTTTGCAGGGAGCTCTGTTCAATATCCACCATCCAGTTTCTATGGTATGGGTCAAGTTGCTCCTCCAGTTAACGGTATGATGACGACAATGGGAGTGAATAAACCTCAGTCAGGAGCTCCTGCAGTGTCATCTAGCCCTACACAGTCTGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGGATGTTTACGAAACAGTGA 1470 0.4497 MNSKANVSKELNAKHKKILEGLLKLPENRGCADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPDQVAFIQSMGNEKANSFWEAELPPNYDRVGIENFIRAKYDEKRWIPRDGNSKTPSGLREEKSPSHWQRPVERSGYAAVSENKFEERKKIQPSDAISTTRINVPAPPRASEQVTPITKPQHVEKVEPVAPQPRAPSPPASQPQAETSKQATDTVQNIPPKVDYATDLFNMLSMDGPNENGSEAAGTTTDDNHWAGFQSAAEVSTAEKTSPLKAADSTPVSASGIEDLFKDLSPVTPSLTPEKPQKDVKNDIMRLFEKANIVSPFSMHQQQLGMLAHQQSLLMAAAAKSTGGDPRYAANIQQPRPPNVPIQSWPATGYSIPGVMPMGGQGDLQKLMQGQPRNMTPAHFAGSSVQYPPSSFYGMGQVAPPVNGMMTTMGVNKPQSGAPAVSSSPTQSAKDYDFSSLTQGMFTKQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1858 489 MobiDBLite consensus disorder prediction 217 233 - -
Gso12g1858 489 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Gso12g1858 489 MobiDBLite consensus disorder prediction 457 477 - -
Gso12g1858 489 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Gso12g1858 489 CDD ArfGap 19 117 - -
Gso12g1858 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 489 IPR044520 GO:0005096
Gso12g1858 489 MobiDBLite consensus disorder prediction 156 170 - -
Gso12g1858 489 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Gso12g1858 489 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Gso12g1858 489 MobiDBLite consensus disorder prediction 123 233 - -
Gso12g1858 489 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gso12g1858 489 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gso12g1858 489 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gso12g1858 489 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Gso12g1858 489 MobiDBLite consensus disorder prediction 123 145 - -
Gso12g1858 489 PANTHER ARF GTPASE ACTIVATOR 1 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1858 Gso-Chr12 42355043 42360314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1858 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 7.82e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1858 K12486 - gmx:100780452 950.658