Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1854 ATGATGATATCAGCTTCCATGTCTTCTCTAACGAGGAGTTCGCTGGAGGAGATGCTTGAATCGCTTCGCCGGAGAGACGAGGAGGAGAAGCCGAAGGACTTGCCGCCGGCATTGCCGTCGCGGCCGCCGTCGAGGGCGCGGTTGCCGCCGGGGAGGAGGTCGCTGCCTAACAACTTCAAGGTGGATGGTGAGAATGGTGTGATGGGGCACAGAAGGAAGGGCAGTTTTGGGACCAAGAAGGTCAAGTTGAATGTTGAATCCCCTTATGAAGTCAAATCAGAAGAGATAGTGAGTGAACAATCATCACCACGTCCGGTTTTTACATCCAATGATGCTTCTGCTGAGTGTGAAGCTCCTCCTCCGACCGGGGAATTGGAGGATGATAATGTTGTTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCGAAAGGGAAGTGGGAGCTGGGAACAATACAGTCAACTTCAGGAGAGGAAGCATCTGTTTCACTCTCAAATGGAAACGTTATCAAAGTAGCCAGATCAGAGCTGTTACCGGCCAATCCTGATATTTTAGAGGGTGTTGAAGATCTTATACAGCTCAGTTATTTAAATGAGCCCTCAGTTCTGCACAATCTTCAGTCTAGATATTCTCAGGATATGATTTACAGTAAATCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATGTTCAAATTTATGGAGATGATTATATTTCAGCTTATAGGCAGAAACTTATGGATAGGCCTCATGTTTATGCTATGGCAGATGCAGCTTATAATGAGATGATGAGAGATGAAGCGAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAAACAGAGACAGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCTGGAATAGAAAATGAAGTTCTCCTGACAAACTTTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACAATGGGGAAAATTTGTGGGGCAAAAATTCAAACTTTTCTGTTAGAAAAGTCAAGAGTTGTTCAACTTGCCTTGGACGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAGAAAGACTGAATCTTAGGGCGGCTAGCGAATATAAATATCTTAACCAGAGTGACTGCATGACAATTGATGGTGTTGATGATGCTAAAAAGTTTCATAGGCTGATGAAAGCATTGGATGTTATTCGAATGTGCAAAGAGGATCAAGAGCTAGTTTTTAAGATGCTGACTGCAATATTATGGTTGGGAAATATATCATTCCAAGATACTGACAATGAAAATCACATTGAGGTGGTGAATGATGAAGCTGTAACAAATGCTGCTTTGCTAATGGGTTGCAGTTCCCATGAGCTAATGGAAGCATTATCTACCCATAAAATCCAAGCTGGCAAGGATACCATTACCAAGACATTGACCTTGCGGCAGGCAATTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGGTTGGCTTGTAGAACAAGTTAATAAGTCACTTGAAGTGGGTAAACGCCGCACTGGGAGATCCATAAGTATCCTTGATATTTATGGGTTTGAGTCATTCCAGAAAAACAGCTTTGAACAATTTTGTATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAACTTGAGCAGGAGGATTACGAATTAGATGGCATTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGTGTGTTTGGATCTCTTTGAGAAGAAGCCTCTGGGGCTACTCTCTTTGTTGGACGAGGAATCGAATTTCCCCAGGGCCAGTGATCTAACACTTGCCAACAAATTTAAACAGCACCTGCACGCTAATCCTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTTAGTGTCTGTCATTATGCAGGGGAGGTTTTGTATGATACAAGTGGCTTCCTAGAAAAGAACAGAGATCCACTACCATCTGATTCCATTCAACTACTGTCATCATGTAGTTGTGAACTGCTACAGTTGTTCGCAAAGACGCTTAATCAGTCTCAGAAGCAATCAAATTCCTTGTATGGAGGTTCTCTGGACTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGACCACCACACCTCACTTCATTCGCTGTATAAAGCCAAATACTAAGCAACAACCTGGAGTATATGATGAAGATCTTGTGCTACAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCAAGGGCTGGATATCCTACTCGAATGACGCATCAAGAGTTTTCCAGAAGGTACGGGTTTCTGCTTTCTGAGGCAAACACATCTCAGGATTCATTGAGCATTTCAGTTGCTGTTTTGCAACAGTTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGATTGGGGCACTGGAGGATAGGAGAAAACATCTTTTGCAGGGAATACTTGGGATTCAAAAAAGCTTTCGTGGTTATCAAGCTCGTCGTCATTACCATGAACTTAAGAATGGAGTGACTATTTTACAATCATTTGTTCGTGGAGAAATTGCAAGAAGGGAATATGGTGTTATGGTGAAGTCTTCTATGACTATTTCTACTGAAAATATTAAGGAGATAGAGGCAGCCACAACACTACAATCTGTAATTCGTGGCTGGCTGGTTCGGAGGCATGCTAGTAGCTTGAATAAGTCAAAGAAATCTCCTGGAAATGCAAGATCTAGGCGAAGGTCACGTGTGAAGATGCCTGAAGTAAAGGATGTGTCCGGTGAGCGGGGCCAGAATCTTCCTTCAGCCTTAGCAGAACTCCAAAGGCGGGTTATCAAGGCTGAAGCTACCATAGAGCAAAAGGAAGAGGAAAATGCCGAATTGAAGGAACAGCTAAAACAATTTGAGAGAAGGTGGATTGAATATGAGAAAAGGATGAAATCAATGGAGGATATGTGGCAAAAACAGATGGCATCTTTGCAAATGAGCCTTGCTGCTGCTAGAAAGAGCCTTGCTTCTGAGAATGCCAGCGGTCAAATTGCGAGGCGTGATGTTGCGTCACCTTTCGGCTATGATTCAGAAGATGCTACTTCTGTGGGATCCCGAACTCCTCGAACACCTGGGGCAAGCACACCTTTGAAGTATTCCAGTAGTCTTACTGAAGCTGGAGCAGGGAGAGATGCCAACGGTACTTTGACTTCAGTCAGCAACCTGATGAAGGAATTTGAGCAACGCAGACATACCTTTGATGATGATGCCAGAGCTCTGGTTGAGGTTAAAGCGGGTCAATCTGCTAACACGAATTCCGTTGAAGAACTTCGGAAACTCAAACATAGCTTTGAGGGGTGGAAGAAAGAATACAAGGCTAGACTAAGAGAGACAAAAGCAAGACTACATAAATCAGAAATGGATAAAAGTCGGCGGAGGTGGTGGGGGAAATTGAGTTCGAGAGCACTATAA 3591 0.4272 MMISASMSSLTRSSLEEMLESLRRRDEEEKPKDLPPALPSRPPSRARLPPGRRSLPNNFKVDGENGVMGHRRKGSFGTKKVKLNVESPYEVKSEEIVSEQSSPRPVFTSNDASAECEAPPPTGELEDDNVVYFIKKKLHVWCRQPKGKWELGTIQSTSGEEASVSLSNGNVIKVARSELLPANPDILEGVEDLIQLSYLNEPSVLHNLQSRYSQDMIYSKSGPILIALNPFKDVQIYGDDYISAYRQKLMDRPHVYAMADAAYNEMMRDEANQSIIISGESGSGKTETAKIAMQYLAALGGGCSGIENEVLLTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTMGKICGAKIQTFLLEKSRVVQLALDERSYHIFYQLCAGSSSDLKERLNLRAASEYKYLNQSDCMTIDGVDDAKKFHRLMKALDVIRMCKEDQELVFKMLTAILWLGNISFQDTDNENHIEVVNDEAVTNAALLMGCSSHELMEALSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFGWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGIDWTKVDFEDNQVCLDLFEKKPLGLLSLLDEESNFPRASDLTLANKFKQHLHANPCFKGERGRAFSVCHYAGEVLYDTSGFLEKNRDPLPSDSIQLLSSCSCELLQLFAKTLNQSQKQSNSLYGGSLDSQKQSVGTKFKGQLFKLMHQLETTTPHFIRCIKPNTKQQPGVYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFSRRYGFLLSEANTSQDSLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQIGALEDRRKHLLQGILGIQKSFRGYQARRHYHELKNGVTILQSFVRGEIARREYGVMVKSSMTISTENIKEIEAATTLQSVIRGWLVRRHASSLNKSKKSPGNARSRRRSRVKMPEVKDVSGERGQNLPSALAELQRRVIKAEATIEQKEEENAELKEQLKQFERRWIEYEKRMKSMEDMWQKQMASLQMSLAAARKSLASENASGQIARRDVASPFGYDSEDATSVGSRTPRTPGASTPLKYSSSLTEAGAGRDANGTLTSVSNLMKEFEQRRHTFDDDARALVEVKAGQSANTNSVEELRKLKHSFEGWKKEYKARLRETKARLHKSEMDKSRRRWWGKLSSRAL* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1854 1196 Pfam IQ calmodulin-binding motif 887 903 IPR000048 GO:0005515
Gso12g1854 1196 Pfam IQ calmodulin-binding motif 922 939 IPR000048 GO:0005515
Gso12g1854 1196 Pfam IQ calmodulin-binding motif 864 881 IPR000048 GO:0005515
Gso12g1854 1196 SMART MYSc_2a 182 859 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 PANTHER MYOSIN 120 1194 - -
Gso12g1854 1196 Gene3D - 864 910 - -
Gso12g1854 1196 MobiDBLite consensus disorder prediction 1064 1105 - -
Gso12g1854 1196 CDD MYSc_Myo8 202 846 IPR036022 -
Gso12g1854 1196 ProSiteProfiles Myosin motor domain profile. 188 858 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 135 184 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 ProSiteProfiles IQ motif profile. 860 888 IPR000048 GO:0005515
Gso12g1854 1196 Gene3D - 559 748 - -
Gso12g1854 1196 SMART iq_5 919 941 IPR000048 GO:0005515
Gso12g1854 1196 SMART iq_5 882 904 IPR000048 GO:0005515
Gso12g1854 1196 SMART iq_5 859 881 IPR000048 GO:0005515
Gso12g1854 1196 Gene3D - 792 859 - -
Gso12g1854 1196 Pfam Myosin head (motor domain) 190 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 MobiDBLite consensus disorder prediction 94 109 - -
Gso12g1854 1196 MobiDBLite consensus disorder prediction 1 74 - -
Gso12g1854 1196 MobiDBLite consensus disorder prediction 1 16 - -
Gso12g1854 1196 PANTHER MYOSIN-2 ISOFORM X1 120 1194 - -
Gso12g1854 1196 ProSiteProfiles IQ motif profile. 883 912 IPR000048 GO:0005515
Gso12g1854 1196 MobiDBLite consensus disorder prediction 1071 1105 - -
Gso12g1854 1196 Coils Coil 1161 1181 - -
Gso12g1854 1196 MobiDBLite consensus disorder prediction 17 35 - -
Gso12g1854 1196 Gene3D - 371 427 - -
Gso12g1854 1196 MobiDBLite consensus disorder prediction 94 122 - -
Gso12g1854 1196 Coils Coil 981 1029 - -
Gso12g1854 1196 Gene3D Myosin VI head, motor domain, U50 subdomain 428 536 - -
Gso12g1854 1196 Gene3D Kinesin motor domain 187 791 IPR036961 -
Gso12g1854 1196 MobiDBLite consensus disorder prediction 942 974 - -
Gso12g1854 1196 ProSiteProfiles IQ motif profile. 920 949 IPR000048 GO:0005515
Gso12g1854 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 908 IPR027417 -
Gso12g1854 1196 PRINTS Myosin heavy chain signature 218 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 PRINTS Myosin heavy chain signature 272 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 PRINTS Myosin heavy chain signature 315 342 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 PRINTS Myosin heavy chain signature 547 575 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso12g1854 1196 PRINTS Myosin heavy chain signature 600 628 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1854 Gso-Chr12 42307015 42318727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1854 1 1190 Myosins gene family AT5G54280 62.744 0.0 1561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1854 K10357 - gmx:100801876 2265.34