Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1851 ATGGCCACCTCTGACCACCCTGTCCAGGAATCACGTTTCTCACGCATGCACTACTTCTCCACTGACGACGACCAGGACGAGGATGACGACGACACCGACCTCGACTTCGTCGACGACAGCAATGTCAGCCCTGCTGAAGAGGAGGAACCCAAAAAATCCGACATTCTCGGCGGCGAGAATTTCAATCGCCGCCGGGAATTTCGGGTGGTGCTGGACCCGCGAGGCAAGTGGGTTCAGGAATGGAACAGGGTGTTCCTCCTCGTGTGCGCCACCGGGTTGTTCGTGGACCCGCTGTTCTTCTACGCGCTGTCGATAAGCGACACGTGTATGTGCCTCTTCGTGGATGGGTGGCTCGTCATCACCGTCACTGCGCTCCGCTGCATGACGGACGCGTTGCACGTGTGGAACATGTGGTTGGAGTTCAAGATGGCGAAACGTTCTTCTTCTTTTATCGGAAGGGACACTAACGCCTCAGGTGGCGGCGGCGGAGGCGGAGGCGGAGGCGGCTATGCTCTTCGCTACCTCAAGGCCAAACGGGGCTTCTTCTTTGACCTCTTTGTCATCCTCCCTATTCCCCAGATTGTGCTATGGGTGACAATTCCGTTCTTGTTGAAGAAAGGATCAATTACGTTGGTGGTGACAGTGTTCTTAATTATGTTCCTCTTTCAATACCTTCCCAAAATTTATCACTCTGTTTGCCTCTTGCGTCGCATGCAAGACCTTTCTGGCTACATTTCTGGCACCGTTTGGTGGGGTATCGCACTCAACCTGATCGCATATTTTGTTGCTTCCCATGCTGCAGGGGCATGTTGGTACTTGCTAGGGTTACAAAGAGCAGCAAAGTGCCTAGAAGAGCAATGTGCAAAAACAACTGGTTGTGGATTGAGAACACTGTGTTGCAAAGAGCCTATATACTATGGAGGCATTAACATTGTAAGAGACAAAACAAGGTTGTTATGGGCACAGAACAGGGAAGCTAGGTCTACTTGCTTGGACAGTGCTGATAACTACGACTATGGTGTATATGAATGGTCTGTACAACTCGTCACAAATGATAGCCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTAAGCACTTTTGGGAACCTAGAGAGCACACCAGAGCGACTAGAAGTGATTTTTAACATTATTGTGTTGACTAGTGGCCTCCTTCTGGTGACTATGCTGATTGGCAACATCAAGGTGTTTTTGCATTCCACAACATCAAAGAAGCAAGCGATGCTATTGAGGATGAGGAACATTGAATGGTGGATGAGCAAAAGGCGATTGCCACAAGGGTTCCGGCAGCGCGTGAGGAACTATGAGCGGATGCGTTGGGCTGCCACGCGCGGGGTTGATGAATGCCAGATGATTAAAAATCTCCCTGAGGGACTAAGAAGGGACATCAAGTACCATCTTTGTTTGGATTTGGTGAGACAGGTGCCACTCTTTCAGCATATGGATGATTTGGTGCTAGAGAATATTTGTGACCGTGTGAAGTCCCTTGTATTCACTAAGGGAGAAACAATAACGAAAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGTAGCCAAGTACTCCGAGACGGAGTGAAGAGTTTCTGCATGTTAGGGCCGGGGAACTTCAGTGGAGACGAGCTGCTCTCATGGTGTCTGAGAAGGCCATTCATAGAGCGTCTTCCACCGTCTTCATGCACGTTGGTGACACTGGAAACGACAGAGGCGTTTGGGCTTGAGGCACAGGACGTGAAGTACGTGACGCAACATTTCAGGTACACATTCGTGAATGAGAAGGTGAAGAGGAGTGCCAGGTATTACTCGCCAGCTTGGAGAACTTGGGCTGCGGTGGCCATTCAGTTGGCTTGGAGGAGGTACCAGCATCGTTTGACTTTGACTTCTTTGTCCTTTATAAGGCCCCGCAGGCCTCTCTCTAGGTCTACTTCCATGGAAGAGGATAGGCTTCGTTTATATACGGCTATGTTAACCTCCCCCAAGCCTAATCAAGATGACTTTGACTTCTGA 2058 0.4966 MATSDHPVQESRFSRMHYFSTDDDQDEDDDDTDLDFVDDSNVSPAEEEEPKKSDILGGENFNRRREFRVVLDPRGKWVQEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFVDGWLVITVTALRCMTDALHVWNMWLEFKMAKRSSSFIGRDTNASGGGGGGGGGGGYALRYLKAKRGFFFDLFVILPIPQIVLWVTIPFLLKKGSITLVVTVFLIMFLFQYLPKIYHSVCLLRRMQDLSGYISGTVWWGIALNLIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTTGCGLRTLCCKEPIYYGGINIVRDKTRLLWAQNREARSTCLDSADNYDYGVYEWSVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHSTTSKKQAMLLRMRNIEWWMSKRRLPQGFRQRVRNYERMRWAATRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITKEGDPVQRMLFVVRGHLQSSQVLRDGVKSFCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEAQDVKYVTQHFRYTFVNEKVKRSARYYSPAWRTWAAVAIQLAWRRYQHRLTLTSLSFIRPRRPLSRSTSMEEDRLRLYTAMLTSPKPNQDDFDF* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1851 685 Pfam Ion transport protein 81 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso12g1851 685 SUPERFAMILY cAMP-binding domain-like 414 602 IPR018490 -
Gso12g1851 685 MobiDBLite consensus disorder prediction 1 57 - -
Gso12g1851 685 MobiDBLite consensus disorder prediction 23 43 - -
Gso12g1851 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 2 682 - -
Gso12g1851 685 ProSiteProfiles cAMP/cGMP binding motif profile. 488 567 IPR000595 -
Gso12g1851 685 SMART cnmp_10 488 617 IPR000595 -
Gso12g1851 685 Pfam Cyclic nucleotide-binding domain 508 596 IPR000595 -
Gso12g1851 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 682 - -
Gso12g1851 685 CDD CAP_ED 488 594 IPR000595 -
Gso12g1851 685 Gene3D Helix hairpin bin 413 479 - -
Gso12g1851 685 Gene3D Jelly Rolls 486 604 IPR014710 -
Gso12g1851 685 SUPERFAMILY Voltage-gated potassium channels 72 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1851 Gso-Chr12 42261258 42271021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1851 57 684 Ion Channels AT5G54250 78.025 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1851 K05391 - gmx:100800795 1355.89