Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1844 ATGGCAAAGTCTTCTAGTGAGAAGAATGGACTGAAGAAGGGTCCATGGACTCCAGAGGAAGATCAGAAACTCATCGATTACATTCAGAAACATGGACATGGGAAATGGAGAACCCTTCCCAAAAATGCAGGACTAAAAAGATGTGGAAAGAGTTGCCGGCTTCGCTGGGCAAACTACTTGAGGCCCGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACTCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCTGTGACTCACACACCTCGCCTTGATGTTCTACAACTTGCCTCCATTCTCAACACATCTTTATACAATTTACCACCCCAATTCAACTACCCTTCTCTTTCTGGAATTGGAAGATCAGTGATAAACCCAAGCCATATGCTAAGTTTGCTCACTACCCTGCTATCATGTCAAAACAGAAATTACAACCCTGATGTATTGAATAATAACCAACTTAGTGACAGTGACACTTTATTGCAAAATCAACCCCAATGTTCCCAAATGCAACTTGATTCTATACAAGCCTTCCAACCAAACCAACCCCATGTCTCACTTCAAGAAAACCATATTGCTAAGTCTAATTCCAATCCATTGAATATGGAATCCCAAGTTATGAAAACTAAATTAGAGAATCACATCATTCCAATTGCTACCCCTTTTAGCCACCAAAACACACTACCAAATTTGTGGCTCTATAATAGTGAAGGTCACATATCTGATCTACCAACAATGGCCCAATCATCATCAGCTATGCAACGTTTCTCTTCTCCCAAGTTCAACTCTATATACAACAATAATCTCTTGGAAAATCAGAATTTGTGTAACAACAACGAGGGGGCGCCAAATTTCAATTTAAGTTCACTGTTATCGTCCACACCCTCATCTTCTAGCCCAATTAGTACTTTGAATTCATCATCTTCCGCGACATTTGTCAACGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAACATGTTATTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1149 0.3995 MAKSSSEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLASILNTSLYNLPPQFNYPSLSGIGRSVINPSHMLSLLTTLLSCQNRNYNPDVLNNNQLSDSDTLLQNQPQCSQMQLDSIQAFQPNQPHVSLQENHIAKSNSNPLNMESQVMKTKLENHIIPIATPFSHQNTLPNLWLYNSEGHISDLPTMAQSSSAMQRFSSPKFNSIYNNNLLENQNLCNNNEGAPNFNLSSLLSSTPSSSSPISTLNSSSSATFVNGTTEDERDTYGSNMLLMYNISNGLNDSGLL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1844 382 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso12g1844 382 MobiDBLite consensus disorder prediction 336 356 - -
Gso12g1844 382 SMART sant 12 62 IPR001005 -
Gso12g1844 382 SMART sant 65 113 IPR001005 -
Gso12g1844 382 CDD SANT 68 111 IPR001005 -
Gso12g1844 382 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso12g1844 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso12g1844 382 CDD SANT 15 60 IPR001005 -
Gso12g1844 382 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso12g1844 382 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gso12g1844 382 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso12g1844 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 367 - -
Gso12g1844 382 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 367 - -
Gso12g1844 382 Gene3D - 10 66 - -
Gso12g1844 382 Gene3D - 68 115 - -
Gso12g1844 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1844 Gso-Chr12 42218596 42220868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1844 1 144 MYB Transcription Factor Family AT4G21440 83.448 3.49e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g1844 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1844 K09422 - gmx:547460 721.85