Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1843 ATGGCGGCTGCATCTGCCGCATTCTCTCGCAATATAAGGGTTTTCTGGCTCACTGTAACGCGATCACAACGTATCAACTATCAACTGCCACAGCATAAAAAACTTATTATAGATGCTGGAGCCTTGCCCTGTCTCGTAGATTTGTTAAGAAGGCACAAGAGCTGTCCCATTTGTAGTCCACTTGTTGGTCTTCTAAGGATAGTAGCTAATGCAATATGCTATCTTGCCTCTGATAATACCAACATTAAGACTCTTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGGTTGAATTCAATGTCACAGAGTTACAGAAAGCAGTTGCATCGGGGTTGGCAACTCTTGCATATGATAATCATGACAATAAAAAACAGATTGTTGAATGCGGTGCATTACGCACTCTTGTACTAATGCTTCAATCAGAGGATTCAAAAATGCATTACGAGGCGGGTGTTGTGATTGAAAAGCTGGTCCATTCATCGCCAGATATTACGAAAGAAGTGCTTGCAGCTGGGGCTTTAGAACCTGTTATTTGTTTACTTAGCAAAAAGCAAGCAGCCCGTTTAATTGGTATATTTGCAGCAACAGATTCAGATTGCAAGGTTCATATTATCCAAAGAGGGGTTATTCCACAATTACTTGACATGCTTAATAGTCATGGGGAAATGGCGGTTTTTGCACTTGGGAGTTTGGCACCGGAATCACATAATCAAGCTGTTTTATCTCTCTATGGTCTTGCTGATAATGAGCTTGCGGATTTTATCGAGGCTGGTGGTTTTCAGAAACTGAAGGATGGACATTTCAAATATCAATGCCGCCGCTGCACGCCCGCACCTGCGTCCTGCTCCGACACTCCGGCGATTGTGATCACCGCCGGAAAACACCGCGGTCCCACTCCCAACACCGAGAAAGCTTCGAAACGAACACACTCTCAAAGTAGGGTTACTCAGCGCAGAGCAATCTCCTCCGCTGTCAACATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATAAAGTTAATTATTTTTGTTTTCTTTGTTTGGGAGTACCAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCAGTGCTCGCCTCAGTGCTTCGCCTTCCACCATTCTCTTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCGATTGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCCATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGCCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTGTTGCTTATAACTAATGACAAAGAGAACAAAAGGAAGGCTAGTGAAGAGGGCATTTTGGCCGAAACAGTTGAGTCATATGTGAAGTCTTTGGACCAACCTGATTTACTTGATCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTCCGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCATGGGAAACTTCGTGTTAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATCGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGAAGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCATCTCTATCTATAGCCCATGAAGACGAGGATGAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTCCTCAGCAGGGTTCTTCTGAACAAGTAAATGCTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAAGTTGAGAACCTTTTGGATAAGAGGATTATTGTGGAAGTTGATTCTTGGGATTGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGGTATGGAATATTGGATTTTGTATGATTTCTCTCTTTGTATCAATAGTGGGAAAAACTAGTATAATCATCCGTCACTAG 2391 0.4366 MAAASAAFSRNIRVFWLTVTRSQRINYQLPQHKKLIIDAGALPCLVDLLRRHKSCPICSPLVGLLRIVANAICYLASDNTNIKTLVRMEGGIPPLVELVEFNVTELQKAVASGLATLAYDNHDNKKQIVECGALRTLVLMLQSEDSKMHYEAGVVIEKLVHSSPDITKEVLAAGALEPVICLLSKKQAARLIGIFAATDSDCKVHIIQRGVIPQLLDMLNSHGEMAVFALGSLAPESHNQAVLSLYGLADNELADFIEAGGFQKLKDGHFKYQCRRCTPAPASCSDTPAIVITAGKHRGPTPNTEKASKRTHSQSRVTQRRAISSAVNMLHNKSFVKKTKGGKVIKLIIFVFFVWEYQVREHYLRDDIYCGAPFCTVCDSSSARLSASPSTILFVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSHSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVPTQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHHGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIEAAELLPQDQWQGVSSLSIAHEDEDEDEDVHLAPNSADDAPRTIPQQGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQVENLLDKRIIVEVDSWDCQSRYPSGHYVRTIGEIGDRDTESEVWNIGFCMISLFVSIVGKTSIIIRH* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1843 796 MobiDBLite consensus disorder prediction 657 674 - -
Gso12g1843 796 CDD PIN_Rrp44-like 337 519 - -
Gso12g1843 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 40 90 IPR000225 GO:0005515
Gso12g1843 796 Gene3D - 355 531 - -
Gso12g1843 796 Gene3D - 23 270 IPR011989 -
Gso12g1843 796 SUPERFAMILY Nucleic acid-binding proteins 554 761 IPR012340 -
Gso12g1843 796 SMART PIN_9 391 504 IPR002716 -
Gso12g1843 796 SMART arm_5 78 119 IPR000225 GO:0005515
Gso12g1843 796 SMART arm_5 121 161 IPR000225 GO:0005515
Gso12g1843 796 SMART arm_5 29 70 IPR000225 GO:0005515
Gso12g1843 796 SMART arm_5 199 235 IPR000225 GO:0005515
Gso12g1843 796 Gene3D - 546 650 - -
Gso12g1843 796 SUPERFAMILY ARM repeat 29 245 IPR016024 -
Gso12g1843 796 Pfam Dis3-like cold-shock domain 2 (CSD2) 711 771 IPR041505 -
Gso12g1843 796 Pfam PIN domain 395 516 IPR002716 -
Gso12g1843 796 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 331 773 - -
Gso12g1843 796 Pfam Armadillo/beta-catenin-like repeat 30 66 IPR000225 GO:0005515
Gso12g1843 796 Gene3D - 689 764 - -
Gso12g1843 796 SUPERFAMILY PIN domain-like 392 525 IPR029060 -
Gso12g1843 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 132 IPR000225 GO:0005515
Gso12g1843 796 MobiDBLite consensus disorder prediction 295 315 - -
Gso12g1843 796 PANTHER RIBONUCLEASE 331 773 - -
Gso12g1843 796 MobiDBLite consensus disorder prediction 639 675 - -
Gso12g1843 796 Pfam Rrp44-like cold shock domain 558 655 IPR033771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1843 Gso-Chr12 42199855 42212139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1843 76 267 U-box Gene Family AT2G23140 27.363 2.30e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1843 K12585 - gmx:100806652 816.994