Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1840 ATGAATCCCAAAATTTCGGACTTTGGCCTTGCTCCCAGATTATGGGGAGACCAAGTAGATGCTAACACTAACAAGATTGCCGGGACATATGGATACGTGCCTCCTGATTATGCTGTACACGGACATTTCTCAATGAAATCCGATGTCTTTAGTTTTGGTGTCATGGTGTTAGAAATAATACCAGTTGATAGGCCTGATATGTCAGCTGTGGTTCTAAGGCTGAATGGTGAAAAATCGTTGCCACAACCAAAGGCACTTGGTTTTTACAATGGAAGGGACAAAGCAGATTTGTATGGACCATTTTCTAACAATTATGTTTCCCTTACAGTTTTTGAGCCAAGATAA 345 0.4087 MNPKISDFGLAPRLWGDQVDANTNKIAGTYGYVPPDYAVHGHFSMKSDVFSFGVMVLEIIPVDRPDMSAVVLRLNGEKSLPQPKALGFYNGRDKADLYGPFSNNYVSLTVFEPR* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1840 114 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1840 114 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 60 - -
Gso12g1840 114 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 61 112 - -
Gso12g1840 114 SUPERFAMILY Protein kinase-like (PK-like) 1 62 IPR011009 -
Gso12g1840 114 Pfam Protein tyrosine and serine/threonine kinase 4 61 IPR001245 GO:0004672|GO:0006468
Gso12g1840 114 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 60 - -
Gso12g1840 114 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 61 112 - -
Gso12g1840 114 Gene3D Transferase(Phosphotransferase) domain 1 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1840 Gso-Chr12 42132308 42133014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1840 1 60 Receptor kinase-like Gene Family AT4G11530 70.492 1.32e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1840 PK_Tyr_Ser-Thr 6.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1840 - - gmx:102670208 238.81