Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1836 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGTGGGGTATCGGGAAGGACAGGGCCCCACTCACTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAATTCTGGGGAGGGTGTTAAGATGATATCAGGTGAGGCTCCAATTATTTTCTCCAAGGCTTGTGACCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATGGCCATTCAAGGCAAAAGGAGGACTTTGCACAAAGAGGATTTGGCTTCTGCTGTTATAGCCACTGATATATTTGATTTCTTGATCACTTTGGTTTCCAATTCTGACAGCCATGCAGTTGGTGGTGCCACAAATGTCATGGAGGTGGAAACTATAGATTACTCTTAA 372 0.4516 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEGVKMISGEAPIIFSKACDLFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSDSHAVGGATNVMEVETIDYS* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1836 123 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Gso12g1836 123 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Gso12g1836 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Gso12g1836 123 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 106 - -
Gso12g1836 123 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1836 Gso-Chr12 42094388 42094939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1836 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.446 1.10e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso12g1836 CBFD_NFYB_HMF 2.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1836 - - gmx:100820378 243.817