Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1834 ATGGCAGATGATGATCAATTTCAAGCAAGTGGGAACTGGTGGGAAACATCAAGAAGCGTGAGGTATGAGAGCGGGGCATCCCAGTCATCTTCCTCAGCCATCACCAACACAGGCAACAACTTTGGTTGGCAAGGTTCGGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTCCATGACACACAGAATAATAAGCTTCAACAACCAGATTCTGCCACTTCCAGTGACCCCAACTTGCATATGATGGGCCTAGGCCTCTCATCCCAAGCCATGGATTGGAATCGAGCATCTTTGTTAAGAGGAGAGAAGGGTACGGAGAACAGTTTCCGGTCGATGCTGCAAGAGAATTTGAGCTCATCAAGGACCAATTTTCAGCATGAAACTGGGAATATGGAGTTGTCACAACAAGTTCAATGGAGGTCAGAGAAGATATTCTCTTCAGAGTCTTCAACCAATGAGTTCAAGCAAGTGAATAGGGGTGGTGGCTTCTCTTTGGATCAAAGCCAGTTTAGTCCTCAATATAGCTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATTGATTCCTCAGCCTTATATGGGACCTCCTCAATCTTGCAAGGACTATTGGGACCTGATCACAATAACCAAACCCAACAACAACCTATGAGTTTTCCATATCATACAACAAGCTATGGATTAAACTCTAATGAATTGGTTCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGCTTCCCCTCCAAAACCACCACCCAATAACCAGTTGCATTTCACTAACCCCGCAACCTTTTGGAATGCTTCTGAGGCTGCAAACATCAAAGATGTTCGCCCCAGCTTCTTCCCTTCATTGCAACCCCCTTTCTCTACGCCAAATTTTGAAGTACAGTCAAAGAATATATCTGAAGTTAGGGAGTCAGGTACTGTGGTAAAGAAAAGTGGGAACGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTACTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACCGCTTTAAGTACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATCTAAGGAAGCTGAGGGTCCAAAGCAGGATCTAAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCAAGTACATTTCCAGTTACCCATGAAACCACGGTTGATTTTTGGACACCAACATTCGGAGGAACTCCCAGATAA 1371 0.453 MADDDQFQASGNWWETSRSVRYESGASQSSSSAITNTGNNFGWQGSDMADMKPRSSMDSSSVVFHDTQNNKLQQPDSATSSDPNLHMMGLGLSSQAMDWNRASLLRGEKGTENSFRSMLQENLSSSRTNFQHETGNMELSQQVQWRSEKIFSSESSTNEFKQVNRGGGFSLDQSQFSPQYSSGDSTVTSQGLPSSNFQIDSSALYGTSSILQGLLGPDHNNQTQQQPMSFPYHTTSYGLNSNELVPSWSKVPQFLRASPPKPPPNNQLHFTNPATFWNASEAANIKDVRPSFFPSLQPPFSTPNFEVQSKNISEVRESGTVVKKSGNEPAPKRTRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQNSGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTPR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1834 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 401 IPR036638 GO:0046983
Gso12g1834 456 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 445 - -
Gso12g1834 456 MobiDBLite consensus disorder prediction 403 422 - -
Gso12g1834 456 MobiDBLite consensus disorder prediction 20 44 - -
Gso12g1834 456 MobiDBLite consensus disorder prediction 317 342 - -
Gso12g1834 456 MobiDBLite consensus disorder prediction 20 88 - -
Gso12g1834 456 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 9 445 - -
Gso12g1834 456 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Gso12g1834 456 MobiDBLite consensus disorder prediction 53 88 - -
Gso12g1834 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Gso12g1834 456 SMART finulus 347 391 IPR011598 GO:0046983
Gso12g1834 456 MobiDBLite consensus disorder prediction 154 193 - -
Gso12g1834 456 MobiDBLite consensus disorder prediction 215 235 - -
Gso12g1834 456 Gene3D - 346 405 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1834 Gso-Chr12 42064717 42069289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1834 106 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.717 7.43e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1834 - - gmx:100796549 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1834 12 42064717 42069289 Gso11g3029 11 46143744 46149771 GST