Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1827 ATGGATTCACAACAGCTCTTCAGTTTCGGTGGTGTTACTAGTGCAGGATTACCTTACATGTCTTCTTTTCCCACTGTTCCATCGCTACCCAACAGGCTACTTAGATCCTTGAAATATGACACAGGAAACTCACCTAATTCACCCTTTTCCACTTATTTTGATTCTGATACTCTTTCAGCATTGAGTGACGGCCAGGAGCAATACAGCCCAGGAGAAATCCTCTCTGGTGTCAGCTCTTCACTGGAAACCAACCATTATATGTATAATAGATCAATCTCCACTTTGGACAGTTTCCCATTATATTCTTATCGGAACTCTCTTCTACAGAATGCGAGTTCTAATCAGAAAATCCAACATGCTTTGCTGGAGCTAGAAACTGCTTTGATGGCCCCGGATGACGATCAAGTTACCACACCGAATACATTGGCCGAGAGACACAGGTCCTGGAACAATGAGAACCATGTGTCACAACATAATACTCAAGCTCAGCCATCATATGCTACCGGCAATAGGCAGTCAAGTGAAGTTGTGCATGTAGAGAAACGGCAAAAGTTGATGGAAGAAGAAGCAACACTGGAAGCTTTCCCACCAAACAATTTGAAGCAATTGCTGATTGCATGTGCCAAAGCCCTGTCTGAAAACAACATGAATGATTTTGATCAATTGGTAGGAAGGGCTAAAGATGCTGTGTCCATCAATGGGGAGCCAATCCAGCGGCTTGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGACGCAAGCATCGGGGAATAGCATCTATCATGCCCTTAGGTGCAAAGAGCCTGAGGGTGATGAATTGCTCACTTACATGCAACTGCTGTTCGAAATCTGCCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATCGCGGAAGCGTGCAGAAACGAGGATCGCATACACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATGACTCTTCTTCAAGCGCTTGCGGCAAGACCTGGCGGTGCTCCCCATGTGCGGATCACAGGGATTGATGATCCTGTTTCCAAATATGCTCGTGGCGACGGACCAGAAGTTGTTGGCAAAAGGTTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGGGTGCCAGTTTTTGCTCCAGATGTGACAAGGGAAATGCTTGATATCAGGCCAGGAGAGGCCTTGGCTGTGAACTTCCCCTTGCAACTCCATCACACAGCTGATGAGAGTGTTCATGTAAGCAACCCAAGGGATGGACTTTTGAGATTGGTAAGGTCACTTTCTCCCAAGGTGACCACATTGGTGGAGCAGGAATCAAACACAAACACAACCCCTTTCTTCAACAGGTTCATTGAAACCTTGGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACCCTCCCAAGAGACAGCAAGGAGAGGATTAATGTGGAGCAACATTGTCTGGCCAGGGATATTGTCAATATCATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTGTTCGGCAAGTGGAAGTCAAGGTTAAAGATGGCCGGCTTCCAGCAATGTCCTTTGAGTTCTTATGTGAATTCTGTGATAAGAAGCCTTCTGAGGTGCTATTCAGAACACTATACACTGGTGGAGAAGGATGGAGCCATGTTGTTAGGGTGGAAGGACAGAAATTTGATATCAGCTTCAGCCTGGCATTGCTAA 1716 0.4586 MDSQQLFSFGGVTSAGLPYMSSFPTVPSLPNRLLRSLKYDTGNSPNSPFSTYFDSDTLSALSDGQEQYSPGEILSGVSSSLETNHYMYNRSISTLDSFPLYSYRNSLLQNASSNQKIQHALLELETALMAPDDDQVTTPNTLAERHRSWNNENHVSQHNTQAQPSYATGNRQSSEVVHVEKRQKLMEEEATLEAFPPNNLKQLLIACAKALSENNMNDFDQLVGRAKDAVSINGEPIQRLGAYMVEGLVARTQASGNSIYHALRCKEPEGDELLTYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGPEVVGKRLALMSEKFGIPVEFHGVPVFAPDVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLKMAGFQQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKDRNLISASAWHC* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1827 571 MobiDBLite consensus disorder prediction 153 172 - -
Gso12g1827 571 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 570 IPR005202 -
Gso12g1827 571 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 570 - -
Gso12g1827 571 MobiDBLite consensus disorder prediction 150 172 - -
Gso12g1827 571 Pfam GRAS domain family 200 569 IPR005202 -
Gso12g1827 571 ProSiteProfiles GRAS family profile. 191 570 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1827 Gso-Chr12 41960674 41964088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1827 121 569 GRAS Transcription Factor Family AT1G50600 55.556 4.78e-175 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso12g1827 GRAS 3.9e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1827 - - gmx:100817877 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1827 12 41960674 41964088 Gso11g3036 11 46238820 46241668 GST
Gso12g1827 12 41960674 41964088 Gso12g1139 12 16442147 16445796 PCT
Gso12g1827 12 41960674 41964088 Gso6g2207 6 42655929 42659502 PCT
Gso12g1139 12 16442147 16445796 Gso12g1827 12 41960674 41964088 PCT
Gso6g2207 6 42655929 42659502 Gso12g1827 12 41960674 41964088 PCT