Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1826 ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCACGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAG 1296 0.4352 MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAHTIPIRENGVDSCNILSDSTLGPESPVRSGRNGMSLWLDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNQVAALAYKCINRAPKKRPSMRDIVQVFTRILKSRYQRNHHHKKSLSATVDEVSIDVDQLETKSSVTDHRREESIDSTADIYDL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1826 431 PANTHER OS01G0253100 PROTEIN 5 405 IPR045271 GO:0004714|GO:0006468
Gso12g1826 431 SUPERFAMILY Protein kinase-like (PK-like) 102 389 IPR011009 -
Gso12g1826 431 MobiDBLite consensus disorder prediction 409 431 - -
Gso12g1826 431 Coils Coil 390 410 - -
Gso12g1826 431 SMART serkin_6 113 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1826 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Gso12g1826 431 Pfam Protein tyrosine and serine/threonine kinase 115 374 IPR001245 GO:0004672|GO:0006468
Gso12g1826 431 MobiDBLite consensus disorder prediction 409 425 - -
Gso12g1826 431 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1826 431 CDD STKc_IRAK 119 378 - -
Gso12g1826 431 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Gso12g1826 431 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 405 - -
Gso12g1826 431 Gene3D Transferase(Phosphotransferase) domain 1 189 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1826 Gso-Chr12 41939927 41945116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1826 24 372 Glycoside Hydrolase AT3G07070 39.946 8.60e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gso12g1826 PK_Tyr_Ser-Thr 3.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1826 - - gmx:100817345 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1826 12 41939927 41945116 Gso11g3037 11 46259902 46264654 GST
Gso12g1826 12 41939927 41945116 Gso12g1137 12 16336734 16353054 PCT
Gso12g1826 12 41939927 41945116 Gso6g2208 6 42672241 42677910 PCT
Gso12g1137 12 16336734 16353054 Gso12g1826 12 41939927 41945116 PCT
Gso6g2208 6 42672241 42677910 Gso12g1826 12 41939927 41945116 PCT