Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1820 ATGGCAATTCAACAATATATGGGTAATGGTATCATAAAGGTTATCTTTTGCATCATTTTGACTTTTAATATTATGGCAATAGTCAGCATTGAAGAGAAGAAAACTCAAGAAGAATTCATTAGCCAACTATTTGATCCAACATCTGGACTATTAACTGAGGACACGGCAGAGGTACTATGGATCACTTGCTGGGAAGATTTTATTCATTTAAAGAAAGAAGTTGGAGATCTTGACTTATGCCTCCCAAAGGAATCATACAGAAAAACCAATGAAATTAGTTCAGAAATTGGTTCAATAGCCAGAGAAAACATCCAAAAATTGATTAGTTCATGTTATCCTCACTTAAAGGAAAATGTTCTTCATTGTTTGAGAAAAAATAATTTTCCATTCAATGCTCTCAAGGAAGAGGGTGACTCCAAGATTTGGCATGTCACTTACATGGGATCACTTTCTTCTAGAAGATATTTGGGTCAAGTTTTTCCCCAGCACGTATCAGAAATATCAATCAAGGAAGATGAATCACCTAAAAAGAACAAGCCTAAGGAAAAAGACTCTAATAAAAAAGACAAAAAGAAGTCGAAGTCTTCTGGCTCAAAGGATAAAAACAAAAACACATCTATGGCTATAACTATAATAGTGACAATTTTAGTTGCAGCATTGCTCTTTTTATGTTGTGGGAGTGGTCGAGTTAGACAAAATGATGAGAGGCCCCTTCTCAGCATGAGCATGAATGACTACTCAGTTGGTTCTTCTTCCAATAATAATCCATACAAAAATTCAATGAAAGAGGAGAAAATTGGGTTTCAATCATCAAGTAATACATTGGTTGATGACAGGAAGAACTCAATGATGGAAACTCAATTTGCAGGAGTTGCTGCTAGTGCTGCTACAAGACCATCATTTGAATTAAAGCCTCCTCCTGGGAGAGTAGCAAACAATGGAGTGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTCTTCCTCATGAGTCATGTTCAATTAAGCCTTTTGATAATTCCATTGTTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTACACCACCAAAGCCTAATAGTGCTGGCCCTCCACCTCCTCCACCTCCTAGCAATGGCCCTAGAGCTCCTCCACCACCACCACTTAGAGGCAAGCCTGGCCCTAGACCTTCACCACCTCCTAGAGTTGGTGGAGGTCCTCCAAGAACAACACCCCCTTTTGGTTCAAAGGTTGCTAAGACTCAGGAAGAAGTTGGAGCCAATTCTGAAGGTGAAGTTAATGCTACTAATAAAGCTAAGCTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCTAACTCAGATCAAACAATGGTCTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACGCTTTTTTGCTATAATACTACGCCTGTGGAAAAAAGCAAAGGGCAACAAAAGAAAGAGGCTTCCTCCCCGTCAGCTTCACCTCAATATATACAGATCATTAACTCAAAGAAATCACAAAATTTATCTATTTTATTAAAAGCATTGAATGTGACAATAGAAGAAGTTTCTGAGGCACTTCTTGAAGGAAATGAGCTCCCCACAGAATTCCTTCAAACCTTATTGAAGATGGCACCAACATCAGAGGAAGAACTTAAGCTTAGACTTTTCAATGGTAATTTAGCCCAACTTGGGCCTGCAGATAGGTTCCTAAAAGCCCTAGTTGACATTCCATTTGCTTTTAAACGAATGGAAGCACTACTTTACATGGGTATTCTTCAAGAAGAACTCACTGGTACTCGAGAATCTTTTGCAATTTTAGAGGTTGCTTGCAAAACGCTGAGAAGCAGTAGATTGTTCCTCAAGCTTCTTGAAGCCGTTCTCAAAACCGGCAACCGTATGAACGATGGAACGTTCCGTGGCGGCGCACAAGCATTCAAACTCGACACACTGCTGAAACTATCTGATGTAAAAGGAGTAGATGGCAAGACCACTCTCCTACACTTCGTAGTTCAAGAGATAATGCGAACCGAGGGCATAAGAGCTGCACGCATGGCAAAAGAGAACCACAGTTTCTCTAGTATAAAATCGGAGGACCTTCTTGAAGACATTTCTTATGAATCAGAAGACCAATACCGCGAACTTGGTCTTCAAGTGGTTTCACGTTTGAGCAGTGAACTCGAGAATGTGAAGAAAGCAGCAGCTTTAGATGCTGATGGATTAATAGGAACAACTTCTAGACTAGGCCATGGACTCATAAAAACAAGAGATTTTGTAAACAAAGACCTAAGTAACATAGATGATGACAAAGGCTTTCATGAGACAGTGAAGAGTTTTGTGGAGAAAGCTGAGGCTGATGTCACGAGTTTACTAGAAGAAGAGAAGAAAATCATGGCCCTAGTCAAGAACACTGGTGATTACTTTCATGGGGACTCAGGGAAGGATGAAGGGTTGAGGTTGTTTGTAATAGTACGTGATTTCTTAGTAATGTTGGATAAGGTGTGCAAGGAGATTCAAAATGGACCAAAGAAGCCTGTAGCCAAAAATGTGAAGAGAGAAGCTTCTAATCATTCTAGAAAGTCGTCTTCCTCCGAAATTCATCCTCTTCCTCCTGATATTCGTCAGAGAATTTTTCCAGCAGTAGTGGCTAATAGAAGGATGGATGGCTTTAGTTCAGATGATGAGAGTCCTTAA 2694 0.4016 MAIQQYMGNGIIKVIFCIILTFNIMAIVSIEEKKTQEEFISQLFDPTSGLLTEDTAEVLWITCWEDFIHLKKEVGDLDLCLPKESYRKTNEISSEIGSIARENIQKLISSCYPHLKENVLHCLRKNNFPFNALKEEGDSKIWHVTYMGSLSSRRYLGQVFPQHVSEISIKEDESPKKNKPKEKDSNKKDKKKSKSSGSKDKNKNTSMAITIIVTILVAALLFLCCGSGRVRQNDERPLLSMSMNDYSVGSSSNNNPYKNSMKEEKIGFQSSSNTLVDDRKNSMMETQFAGVAASAATRPSFELKPPPGRVANNGVLPLKPPPGRPDLLPHESCSIKPFDNSIVPPPSPPPPPPTPPKPNSAGPPPPPPPSNGPRAPPPPPLRGKPGPRPSPPPRVGGGPPRTTPPFGSKVAKTQEEVGANSEGEVNATNKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFCYNTTPVEKSKGQQKKEASSPSASPQYIQIINSKKSQNLSILLKALNVTIEEVSEALLEGNELPTEFLQTLLKMAPTSEEELKLRLFNGNLAQLGPADRFLKALVDIPFAFKRMEALLYMGILQEELTGTRESFAILEVACKTLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARMAKENHSFSSIKSEDLLEDISYESEDQYRELGLQVVSRLSSELENVKKAAALDADGLIGTTSRLGHGLIKTRDFVNKDLSNIDDDKGFHETVKSFVEKAEADVTSLLEEEKKIMALVKNTGDYFHGDSGKDEGLRLFVIVRDFLVMLDKVCKEIQNGPKKPVAKNVKREASNHSRKSSSSEIHPLPPDIRQRIFPAVVANRRMDGFSSDDESP* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1820 897 Pfam Formin Homology 2 Domain 428 831 IPR015425 -
Gso12g1820 897 SUPERFAMILY Formin homology 2 domain (FH2 domain) 364 840 - -
Gso12g1820 897 MobiDBLite consensus disorder prediction 167 202 - -
Gso12g1820 897 Gene3D Formin, FH2 domain 429 866 IPR042201 -
Gso12g1820 897 PANTHER FORMIN-LIKE PROTEIN 1 162 - -
Gso12g1820 897 PANTHER FORMIN-LIKE PROTEIN 346 895 - -
Gso12g1820 897 PANTHER FORMIN-LIKE PROTEIN 183 342 - -
Gso12g1820 897 ProSiteProfiles Formin homology-2 (FH2) domain profile. 423 857 IPR015425 -
Gso12g1820 897 MobiDBLite consensus disorder prediction 341 400 - -
Gso12g1820 897 MobiDBLite consensus disorder prediction 842 873 - -
Gso12g1820 897 MobiDBLite consensus disorder prediction 299 426 - -
Gso12g1820 897 SMART it6_source 422 846 IPR015425 -
Gso12g1820 897 MobiDBLite consensus disorder prediction 846 860 - -
Gso12g1820 897 PANTHER FORMIN-RELATED 346 895 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gso12g1820 897 PANTHER FORMIN-RELATED 1 162 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gso12g1820 897 PANTHER FORMIN-RELATED 183 342 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gso12g1820 897 MobiDBLite consensus disorder prediction 167 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1820 Gso-Chr12 41894993 41900156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1820 405 838 FH2 protein (formin) Gene Family AT3G25500 48.980 7.00e-121 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1820 - - gmx:100792872 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1820 12 41894993 41900156 Gso11g3043 11 46297342 46302530 GST
Gso12g1820 12 41894993 41900156 Gso12g1135 12 16230120 16237706 PCT
Gso12g1820 12 41894993 41900156 Gso6g2211 6 42714229 42721573 PCT
Gso12g1135 12 16230120 16237706 Gso12g1820 12 41894993 41900156 PCT
Gso6g2211 6 42714229 42721573 Gso12g1820 12 41894993 41900156 PCT