Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1815 ATGGTTTCCCCGGAAAACAGCAATTGGCTGTTCGATTACCCGCTGATCGACGACGTTATTCCCGTCGGCGACGCCTCCTTTTCCGTCTCCGCCTCCGCCTTCTCCTGGCCCCCACCTCCCGCCAATGTCAGTGTTGAAATTGATGCTTCGCTTGGGGATTCTGATGGCCCCAAAGATACTGCTTTGAAGAAAAGGGCTAGATGTGATTCAAGTACTGCTTCTAGCTCTAAAGCGTGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAATTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGCCCGAATGGTAACACAGCTGCGGGATGAAGCCCTGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGATGCAGGTAAAATCAATGAATGCTCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAGTTGATGCCTTTCATCAGGTACCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCCACCATGGATACCTCACAGGATCATGTTCTCCGTCCACCAGTTGCCTAA 702 0.5057 MVSPENSNWLFDYPLIDDVIPVGDASFSVSASAFSWPPPPANVSVEIDASLGDSDGPKDTALKKRARCDSSTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAARMVTQLRDEALKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEMQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLMPFIRYPGVAMWQFMPPATMDTSQDHVLRPPVA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1815 233 PANTHER BHLH TRANSCRIPTION FACTOR 1 233 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso12g1815 233 CDD bZIP 138 170 - -
Gso12g1815 233 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 233 - -
Gso12g1815 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Gso12g1815 233 SMART finulus 78 129 IPR011598 GO:0046983
Gso12g1815 233 MobiDBLite consensus disorder prediction 46 80 - -
Gso12g1815 233 CDD bHLH_AtILR3_like 77 152 - -
Gso12g1815 233 Gene3D - 63 121 IPR036638 GO:0046983
Gso12g1815 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
Gso12g1815 233 Coils Coil 120 175 - -
Gso12g1815 233 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Gso12g1815 233 Gene3D arf6 gtpase in complex with a specific effector, jip4 122 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1815 Gso-Chr12 41865685 41868094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1815 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.333 3.22e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1815 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1815 - - gmx:100813088 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1815 12 41865685 41868094 Gso11g3048 11 46330418 46332915 GST
Gso12g1815 12 41865685 41868094 Gso12g1130 12 16030030 16033854 PCT
Gso12g1815 12 41865685 41868094 Gso6g2214 6 42784664 42788864 PCT
Gso12g1130 12 16030030 16033854 Gso12g1815 12 41865685 41868094 PCT
Gso6g2214 6 42784664 42788864 Gso12g1815 12 41865685 41868094 PCT