Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1795 ATGATGAAAAACGTATCATGGTTTTGGACCCGGTTGGGCCGTGGATCATCCTCCAATTTCAGCACAGTAAGTATAGCATCCAGTTCTTCCAATGACTCCGTCGACAGTAGCATCCAAAACCAAAACTACAGATACGATGTATTTATCAGTTTCAGAGGTCCTGACACCCGCAACACTTTCGTTGATCATCTTTATGCCCATCTCCTCCGAAAGGGTATTTTCGTCTTTAAGGATGACAAAAAGCTCCATAAAGGAGAATCCATATCAGCACAGCTTCTACAAGCAATTCAAGATTCACGCCTTTCAATCATTGTCTTTTCCAAACAATACGCTTCCTCCACATGGTGTTTAGACGAAATGGCCGCTATAGCTGATTGCAAACAACAATCAAACCAAACTGTGTTCCCTGTTTTCTATGATGTAGATCCATCTCATGTAAGACATCAGAACGGGGCATACGAGGTTGCCTTTGTTTCACACAGATCGAGATTCAGAGAAGATCCAGACAAGGTTGATCGATGGGCGAGAGCTATGACGGATCTGGCCAATTCAGCTGGTTGGGATGTCATGAACAAGCCCGAGTTTAGAGAGATTGAAAATATTGTTCAAGAGGTGATAAAAACATTGGGTCATAAATTCTCTGGGTTTGTTGATGACCTCATTGGGATACAATCACGTGTACAAGAATTAGAAGGTAGTTTAAAATTAAGTTCAAATAATGATAATGTTCGAGTTTTAGGAATTTGCGGGATGGGTGGAATAGGAAAGACAACTCAGGCTGTTGTCTTGTATGATAGAATATCTTACAAGTTTGACGCTTGTTGTTTCGTTGAGAATGTAAACAAAATTTACAGGGATGGAGGTGCAACTGCTATACAAAAGCAAATAGTTCGTCAAACTTTAGACGAGAAAAATCTAGAAATATATAGTCCTTTTGAAATATCAGGAATAGTAAGAAATAGGCTACACAACATAAAAGTCCTCATATTTCTTGACAATGTTGACCAAATAGAGCAATTGCAGGAATTGGCCATAAACCCTAATTTTCTTTTTGAAGGGAGTAGAATGATTATTATCACTAGGGATGAGCATATTCTAAAAGTGTATGGAGCACATGTAATACACAAGGTTTCATTAATGAATAATAATGATGCTCGCAAGCTGTTTTATTCAAAAGCTTTCAAAAGTGAAGACCAAAGTAGTAGTTGTGTAGAGTTGATTCCTGAGGTACTCAAATATGTCCAGTGTCTTCCATTAGCAATTAAAGTAATAGGTTCTTTCTTGTGTACTCGAAATGCTACCCAATGGAAAGATGCTTTGGATAGATTTCAGAATAGTCCAGATAATGGAATCATGGATGTACTTCAAATAAGTATTGATGGACTACAATATGAAGAAAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGAAGAGATGGAGGATTATGCTAAGCGAATTCTGAACTGTTGTGGATTACACACTCACATTGGAATCCCAAGACTCATTGAGAAATCACTCATAACACTTAGAGATCAAGAAATTCATATGCATGATATGTTGCAAGAATTGGGAAAGAAAATTGTTCGCAATCAATTTCCTGAACAACCAGGATCATGGAGTAGAATATGGCTTTATGAAGATTTCTTTCGTGTCATGACAACCCAAACGGGAACAAATAATGTCACAGCCGTAGTTCTAAATAAAAAAGATCAAGATATGTCCGAATGTAGCGTTGCAGAACTATCAAAAATGAAGAACCTTAGGTTGCTTATATTATACAATAAAAGTTTTTCAGGAAGCCTTGATTTTCTCTCCTCCCAGCTGCGATATCTTTTGTGGCATGATTATCCTTTTACTTCTTTGCCATCATGTTTTGCGGCCTTTGGTCTTGTGGAATTGAATATGCCTAGTAGTAGCATCAATTGTTTATGGGAAGGCCGCAAGAATTTTACATGTCTGAAAAGGATGGATTTGAGCAACTCCAAATTTCTTGTAGAGACTCCAGATTTTTCTGGGGCCCCATACCTTGAGCGGTTGGATCTTTCAGGATGCACAGATTTAACATTTGTCCATCCATCAATGGGACGTCTTGAAAACCTTGTTTTCTTGAGTTTCAGAAATTGTAACAATCTAATAAGCATCAAAATTGGCCGTGGTTTTAATCTAATATCTTTGAGAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACACCCCAGATTTTACAAGGACAACAAATCTTGAGTACCTTGACTTTGATGGATGTACAAGTTTATCCTCGGTACATGAATCTATTGGAGCTCTTGCAAAACTTACATTCTTGAGTTTTAGAGACTGCAAAAATCTTGTTAGTATACCTAACAACATGAATACCATGACATCTCTTCAAACCCTAGATTTATGGGGATGCTTGGAACTTATGGATTTGCCCTTAGGACGAGCTTTCAGTCCTTCATCCCATTTGAAATCTTTGGTTTTTCTGGATATGGGCTTTTGCAATCTAGTTAAAGTACCTGATGCTATTGGAGAGTTAAGGTGTTTAGAAAGACTGAATCTTCAAGGAAACAATTTTGTTTCAATACCTTATGATTCCTTCTGTGGGCTACATTGTCTAGCGTATTTAAACTTGTCTCATTGCCATAAGCTTGAAGCTTTGCCCGACCTTCCATCAGAAAGGGCTTCATTAGGGGGATGGTATTTTAAAACGGTATCTGGATCTCGTGACCATAGGTCAGGGTTATATGTTTTTGATTGTCCCAAGCTGGCTCATATGTTGGTGTCGCCAAGCAGAGACTTAGAACTTGCATGGTTAGTGAGACTGATTAAGGAACCTTGTAATTTTCGGTGTGGCTTTGACATTGTTGTTCCTTTGGGTTTGGAAGTTATTCTTCCTCGGTGGTTATTAAACCAAGGGTTTAAAGGGGATTCAGTTATACGGATAATGCAGTTTAATGTGGATGACAACTGGATTGGTTTTGTCTTTTGTGTTACATTTGAGCGGAACATTATTCGTCCTGCGGTTTCTAGTAGTTCTCCACATTGTTCATTTTCTTCGTCACATCCGTTTCGTCTTTCTTTTGAAAGTGAATACACAGAAGAATACTTTGACATGCCACTTAATTTGGAGTTGAACAAGATTTATGGATCAAAACATCTTTGGGTCATTTATATCTCTCGAGAACACTGCCATTTTGTGAAAACAGGGGCTCATATCACATTTAAAGCCCACTCAAGTGTTAAGATCAATGCATGGGGCATGAAGAGTATATTCAGGCAAGATATAGATGACCTTGAAAGGATGCAACAAGGAGAATCTCTTCCACTCCATCCTAATGATGTAGTACACCATGTTGACTTTGATAGTGTAGAAAAAAGTAACAACAACTCTGGGCCTAAATTCCAGCTTCCTTACAATTGGTTGGTTACAAAGGAAGATGAAGTTGAGAATATGAACACAAAGGCAAAAGAAACTAATCTCTCTAATGCGGGGTTGTCAGACGACACAAGATCTTTATTTAAGATCCCAAGCCTAGAAGATGTGCTCCGCAGGCGGCCTCGGCCTTAG 3573 0.3823 MMKNVSWFWTRLGRGSSSNFSTVSIASSSSNDSVDSSIQNQNYRYDVFISFRGPDTRNTFVDHLYAHLLRKGIFVFKDDKKLHKGESISAQLLQAIQDSRLSIIVFSKQYASSTWCLDEMAAIADCKQQSNQTVFPVFYDVDPSHVRHQNGAYEVAFVSHRSRFREDPDKVDRWARAMTDLANSAGWDVMNKPEFREIENIVQEVIKTLGHKFSGFVDDLIGIQSRVQELEGSLKLSSNNDNVRVLGICGMGGIGKTTQAVVLYDRISYKFDACCFVENVNKIYRDGGATAIQKQIVRQTLDEKNLEIYSPFEISGIVRNRLHNIKVLIFLDNVDQIEQLQELAINPNFLFEGSRMIIITRDEHILKVYGAHVIHKVSLMNNNDARKLFYSKAFKSEDQSSSCVELIPEVLKYVQCLPLAIKVIGSFLCTRNATQWKDALDRFQNSPDNGIMDVLQISIDGLQYEEKEIFLHIACFFKEEMEDYAKRILNCCGLHTHIGIPRLIEKSLITLRDQEIHMHDMLQELGKKIVRNQFPEQPGSWSRIWLYEDFFRVMTTQTGTNNVTAVVLNKKDQDMSECSVAELSKMKNLRLLILYNKSFSGSLDFLSSQLRYLLWHDYPFTSLPSCFAAFGLVELNMPSSSINCLWEGRKNFTCLKRMDLSNSKFLVETPDFSGAPYLERLDLSGCTDLTFVHPSMGRLENLVFLSFRNCNNLISIKIGRGFNLISLRVLHFSGCTKLENTPDFTRTTNLEYLDFDGCTSLSSVHESIGALAKLTFLSFRDCKNLVSIPNNMNTMTSLQTLDLWGCLELMDLPLGRAFSPSSHLKSLVFLDMGFCNLVKVPDAIGELRCLERLNLQGNNFVSIPYDSFCGLHCLAYLNLSHCHKLEALPDLPSERASLGGWYFKTVSGSRDHRSGLYVFDCPKLAHMLVSPSRDLELAWLVRLIKEPCNFRCGFDIVVPLGLEVILPRWLLNQGFKGDSVIRIMQFNVDDNWIGFVFCVTFERNIIRPAVSSSSPHCSFSSSHPFRLSFESEYTEEYFDMPLNLELNKIYGSKHLWVIYISREHCHFVKTGAHITFKAHSSVKINAWGMKSIFRQDIDDLERMQQGESLPLHPNDVVHHVDFDSVEKSNNNSGPKFQLPYNWLVTKEDEVENMNTKAKETNLSNAGLSDDTRSLFKIPSLEDVLRRRPRP* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1795 1190 SMART till_3 44 184 IPR000157 GO:0007165
Gso12g1795 1190 ProSiteProfiles TIR domain profile. 43 209 IPR000157 GO:0007165
Gso12g1795 1190 Gene3D - 380 468 IPR042197 -
Gso12g1795 1190 ProSiteProfiles Leucine-rich repeat profile. 849 870 IPR001611 GO:0005515
Gso12g1795 1190 PRINTS Disease resistance protein signature 245 260 - -
Gso12g1795 1190 PRINTS Disease resistance protein signature 321 335 - -
Gso12g1795 1190 PRINTS Disease resistance protein signature 414 428 - -
Gso12g1795 1190 PRINTS Disease resistance protein signature 793 809 - -
Gso12g1795 1190 SUPERFAMILY L domain-like 518 890 - -
Gso12g1795 1190 Gene3D Ribonuclease Inhibitor 553 718 IPR032675 -
Gso12g1795 1190 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 652 IPR044974 GO:0006952
Gso12g1795 1190 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 663 890 IPR044974 GO:0006952
Gso12g1795 1190 Pfam Leucine rich repeat 830 883 IPR001611 GO:0005515
Gso12g1795 1190 Pfam NB-ARC domain 235 447 IPR002182 GO:0043531
Gso12g1795 1190 Gene3D - 39 214 IPR035897 -
Gso12g1795 1190 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 663 890 - -
Gso12g1795 1190 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 41 652 - -
Gso12g1795 1190 Gene3D - 215 374 IPR027417 -
Gso12g1795 1190 Gene3D Ribonuclease Inhibitor 719 815 IPR032675 -
Gso12g1795 1190 Gene3D Ribonuclease Inhibitor 816 933 IPR032675 -
Gso12g1795 1190 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 187 IPR035897 -
Gso12g1795 1190 Pfam TIR domain 45 211 IPR000157 GO:0007165
Gso12g1795 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1795 Gso-Chr12 41604329 41612480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1795 723 890 WRKY Transcription Factor Family AT4G12020 35.714 1.05e-13 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1795 - - var:108332841 1633.62