Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1793 ATGCATCACCGCAGATTCAGCAAATTAATACATGTGGCTGACCCAGATGAGCCCGAGTCAGGGCCCGAGCCTGCCTCAGAAGCTGGGCCTGCTTCTCCTTCTTCCGGTGAAGACACTAAAACTGAAGCACCGTCACCCAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGAATTATCCACCGTCTGATTCATGGGCCTGGAGGAAGTACGGCCAAAAGCCCATCAAAGGCTCCCCTTACCCAAGGGGATACTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGCGAAGCCGTGTGGACCCCACAAAGCTCATAGTCACCTACGCTTATGAACACAACCACTCCCTTCCTTTTCCAAAATCAAATTCTTCCGCCGCTTCCGCCGCCGTAAGCGACGGCGCAGCCGTCTCGCCGATAGAGTCCGCCGCCAGGTTCCCGCCGGAGGAGGAGATGACGGTGTTCGCGACAGACTCCGACCTCGAACTCGCCGGCGACGCGGCGGTTCTGCTCAGCCACCACCACCACCACTTCGGCTGGTTCGATGACGTAGCGTCCACCGGCGTCCTAGAGAGCCCGATCTGCGGCGAGGTGGATGACGTGGCGGTGCCGATGAGAGAAGAGGACGAGTCGCTCTTCGCCGATCTCGGCGAGTTGCCGGAGTGCTCGGCAGTTTTCCGGCGGAGGAATATTCCGGCGACCAGCGCGATCCGGTGCGGCGGCATCACAGGATAA 792 0.5871 MHHRRFSKLIHVADPDEPESGPEPASEAGPASPSSGEDTKTEAPSPKKRREMKKRVVTIPIGDVDGSKSKGENYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAYEHNHSLPFPKSNSSAASAAVSDGAAVSPIESAARFPPEEEMTVFATDSDLELAGDAAVLLSHHHHHFGWFDDVASTGVLESPICGEVDDVAVPMREEDESLFADLGELPECSAVFRRRNIPATSAIRCGGITG* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1793 263 Gene3D WRKY domain 64 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g1793 263 MobiDBLite consensus disorder prediction 1 78 - -
Gso12g1793 263 Pfam WRKY DNA -binding domain 78 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1793 263 PANTHER OS01G0750100 PROTEIN 24 254 - -
Gso12g1793 263 SUPERFAMILY WRKY DNA-binding domain 73 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g1793 263 ProSiteProfiles WRKY domain profile. 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1793 263 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g1793 263 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 24 254 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1793 Gso-Chr12 41584913 41587688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1793 3 250 WRKY Transcription Factor Family AT3G58710 51.154 2.06e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso12g1793 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1793 - - gmx:100170680 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1793 12 41584913 41587688 Gso11g3072 11 46574748 46577471 GST