Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1790 ATGGCCTCTATGCCGTTGGGGCCGCAGCAACAGCTTCCACCGCCGCCGCCGCAACAACCGCCGCCAGCGGAGAATGACGCGATGAAAGTGGACTCTCGCGGCGGCTCCGACGCCGGCACCGAAAAGGAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAAACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGGCGAAGTGCTTGGAGACTGGCGAGGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGTGAACTGCAGTTAATGCGCGTGATGGATCACCCAAATATAATTTCCTTGAGTAACTATTTCTTCTCTACAACAAGTAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATCTTCCGTGTTATAAAGCACTACAGTAGCATGAAACAGAGAATGCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCGTATATCCATACTGTACCAGGAATCTGCCATAGGGATTTGAAGCCTCAAAATCTTTTGGTTGATCGACTCACACACCAAGTCAAGCTCTGTGATTTTGGGAGTGCAAAAGTTCTGGTGGAGGGTGAATCAAACATTTCATACATATGTTCACGGTACTATCGTGCCCCAGAGCTAATATTTGGTGCGGCAGAATACACAACTTCTGTTGATATTTGGTCCGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGCCTTTGTTCCCAGGAGAAAATCAGGTTGACCAACTCGTGGAAATTATCAAGATTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAATCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCCCGGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAATTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTCAGGCGGCAAACCCAAATGTAA 1230 0.4675 MASMPLGPQQQLPPPPPQQPPPAENDAMKVDSRGGSDAGTEKEMSAPVADGNDALTGHIISTTIAGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNIISLSNYFFSTTSRDELFLNLVMEYVPETIFRVIKHYSSMKQRMPLIYVKLYTYQIFRGLAYIHTVPGICHRDLKPQNLLVDRLTHQVKLCDFGSAKVLVEGESNISYICSRYYRAPELIFGAAEYTTSVDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKILGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFHKRMPPEAIDLASRLLQYSPKLRYSAVEAMAHPFFDELREPNARLPNGRPLPPLFNFKQELDGAPPELLPKLIPEHVRRQTQM* 410
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1790 409 ProSiteProfiles Protein kinase domain profile. 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1790 409 SMART serkin_6 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1790 409 Gene3D Phosphorylase Kinase; domain 1 62 156 - -
Gso12g1790 409 SUPERFAMILY Protein kinase-like (PK-like) 76 385 IPR011009 -
Gso12g1790 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Gso12g1790 409 ProSitePatterns Protein kinases ATP-binding region signature. 83 107 IPR017441 GO:0005524
Gso12g1790 409 Gene3D Transferase(Phosphotransferase) domain 1 157 404 - -
Gso12g1790 409 MobiDBLite consensus disorder prediction 1 53 - -
Gso12g1790 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 24 407 - -
Gso12g1790 409 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA-LIKE 24 407 - -
Gso12g1790 409 MobiDBLite consensus disorder prediction 8 23 - -
Gso12g1790 409 Pfam Protein kinase domain 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1790 409 CDD STKc_GSK3 72 364 IPR039192 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso12g1790 Gso-Chr12 41550530 41555376 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1790 81 391 MAP Kinase Gene Family AT3G59790 35.583 2.98e-57 191
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso12g1790 Pkinase 1.2e-64 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1790 K14502 - gmx:100806839 801.201
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1790 12 41550530 41555376 Gso11g3074 11 46597279 46602150 GST