Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1789 ATGGCCCCCTTGTTACGTACCCTCTTCTTTGTTGCACTCTCCATTCTTTCTCTCCTTGCTTGTTTTACCAATGCACAACTTTCTACCAACTTTTATGATAAAACTTGTCCTAACCTTCAAACCATTGTGAAAAATGCAATGCAGCAAGCTATCAATGGAGAAGCCAGGCTTGGAGCCTCTATACTTCGATTGTTCTTCCACGACTGTTTCGTGAACGGCTGCGATGCATCAATCTTATTGGATGACACTACCACGTTTGTGGGTGAGAAAAATGCATTACCTAACCGAAATTCAGTGAGGGGTTACGAAGTGATTGACACCATTAAAACCAACGTTGAAGCTGCTTGCAATGGCACGGTCTCTTGTGCAGATATTCTAGCACTTGCAGCAAGAGATGGAGTAGTTCTGGTTGGAGGACCTTCATGGGCAGTAGCACTAGGCAGAAGGGATGCAAGAACAGCAAGCGAGAGTGCAGCCAACAACGAAATCCCTTCACCATTCTTGGACCTTCCCACACTCGTGTCCATGTTCGCCGCCAAAGGGTTAAGCGCACGTGACCTCACGGTGCTCTCCGGTGGCCACACCATAGGCCAAGCACAGTGCCAATTTTTCAGAAGTCGCATATACAACGAGACCAACATTGACCCCAACTTTGCCGCATCAAGAAGAGCCATTTGCCCTGCCTCTGCTGGGGACACCAACTTGTCCCCTCTTGAGTCTCTCACTCCCAATCGCTTTGACAACAGCTACTACTCTGAGCTTGCGGCTAAGCGTGGCCTTCTCAACTCGGACCAAGTGCTTTTCAATGACCCTTTGGTCACAACATATAGTACCAATAATGCTGCTTTTTTCACTGACTTTGCTGATGCTATGGTTAAGATGAGCAATATTAGTCCTCTCACTGGGACTAGTGGTGAGATTCGAAGGAATTGCAGAGTTCTGAATTGA 948 0.4715 MAPLLRTLFFVALSILSLLACFTNAQLSTNFYDKTCPNLQTIVKNAMQQAINGEARLGASILRLFFHDCFVNGCDASILLDDTTTFVGEKNALPNRNSVRGYEVIDTIKTNVEAACNGTVSCADILALAARDGVVLVGGPSWAVALGRRDARTASESAANNEIPSPFLDLPTLVSMFAAKGLSARDLTVLSGGHTIGQAQCQFFRSRIYNETNIDPNFAASRRAICPASAGDTNLSPLESLTPNRFDNSYYSELAAKRGLLNSDQVLFNDPLVTTYSTNNAAFFTDFADAMVKMSNISPLTGTSGEIRRNCRVLN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1789 315 PANTHER PEROXIDASE 72-RELATED 17 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 Pfam Peroxidase 43 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Gso12g1789 315 PANTHER PEROXIDASE 17 314 - -
Gso12g1789 315 Gene3D - 30 312 - -
Gso12g1789 315 CDD secretory_peroxidase 26 313 IPR033905 GO:0004601|GO:0042744
Gso12g1789 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Gso12g1789 315 SUPERFAMILY Heme-dependent peroxidases 26 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 ProSiteProfiles Plant heme peroxidase family profile. 26 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 Gene3D Peroxidase, domain 2 164 294 - -
Gso12g1789 315 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso12g1789 315 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1789 Gso-Chr12 41538071 41541490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1789 25 311 Peroxidase AT5G05340 61.433 2.68e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1789 K00430 - gmx:100806309 617.461