Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1788 ATGGAAGAAGATTTTGGGTACAGAAGGAAGGCGAAGATAGCACTCGTCGCAATCATGGTACTCGCCTCCGTCGCCGTGTTTGCGCTGCTCGTTGCCTTCGCCTACTACTGCTACATCCTCAACAAGGTCTCGAATCGTCGCAAAAGCCTCAAAAAAGTTGAAGATGCCAACCTTAACGAGAAAAGTGACTTTGCAAATCTGCAAGTTGTTGCTGAGAAAGGACTTCAGGTGTTCACTTTCAAGCAGCTGCATTCTGCAACAGGGGGCTTCAGCAAGTCAAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAACGATGGCAGGAAAGTTGCAATCAAATTCATGGATCAGGCAGGAAAGCAAGGAGAAGAAGAATTTAAAGTAGAGGTGGAACTGCTAAGTCGGTTGCATTCTCCATATCTGCTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGTTGGTGTATGAATTTATGGCAAATGGTGGACTGCAGGAACATCTCTATCCTGTCAGCAATTCTATTATTACGCCTGTAAAATTGGATTGGGAAACACGACTAAGAATAGCACTTGAAGCTGCTAAGGGTTTGGAATATCTTCATGAGCATGTCAGTCCCCCAGTGATTCACAGAGATTTTAAGAGTAGCAACATCCTCTTGGACAAGAAATTTCATGCCAAGGTTTCTGATTTTGGATTGGCGAAGCTTGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGGGTTTTGGGCACCCAGGGATATGTTGCCCCTGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTGTACAGTTATGGTGTTGTACTTTTGGAGCTGCTCACTGGCCGGGTGCCTGTTGATATGAAGAGACCTCCAGGGGAAGGTGTTCTTGTTTCTTGGGCTCTGCCCCTTTTGACTGATAGAGAAAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAATACTCTATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCTGCAATGTGTGTGCAACCGGAGGCAGATTATCGGCCTCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTGAAGACTCAAAGGTCCCCTTCAAAGGTTTCCTTTGGAGGTTGA 1152 0.4557 MEEDFGYRRKAKIALVAIMVLASVAVFALLVAFAYYCYILNKVSNRRKSLKKVEDANLNEKSDFANLQVVAEKGLQVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVSNSIITPVKLDWETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPSLEGQYSMKEVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSPSKVSFGG* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1788 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Gso12g1788 383 Gene3D Transferase(Phosphotransferase) domain 1 166 380 - -
Gso12g1788 383 Pfam Protein kinase domain 91 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1788 383 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Gso12g1788 383 PANTHER OS01G0750732 PROTEIN 4 377 - -
Gso12g1788 383 SUPERFAMILY Protein kinase-like (PK-like) 72 366 IPR011009 -
Gso12g1788 383 Gene3D Phosphorylase Kinase; domain 1 50 165 - -
Gso12g1788 383 ProSiteProfiles Protein kinase domain profile. 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1788 383 CDD STKc_IRAK 96 369 - -
Gso12g1788 383 PANTHER OS07G0227300 PROTEIN 4 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1788 Gso-Chr12 41529596 41534773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1788 1 380 Receptor kinase-like Gene Family AT3G58690 79.211 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gso12g1788 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1788 - - gmx:100804893 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1788 12 41529596 41534773 Gso11g3075 11 46614693 46619256 GST