Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1786 ATGGATGAGACAATTTGCGTATCTGAAGAAGATCATAAGAGTGGAAGTAGCAAACCCTCTTCTCCAAGTCTTAGAAGAAAACGTTCATTTTTCGATTTGAATGAAGAAGCTGTGGATGGTGGTGGAGATGATAGCACCAGTGATGATGACCCCATCAATAGCAATGACATTTCATCACAAGAAGGTAATTTGAGTAGCAATAATAACTCTAGTGAAGAAGGGAAGGAGCGTGCATCTACGGTTAGGCAATATGTTCGGTCCAAAATGCCAAGGCTCCGTTGGACTCCTGATCTCCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTAATGAATGTGAGAGGACTCAGCATTGCACATGTAAAGAGCCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTATCTCACAATAGGTCAATGCAAGGAAGGCATAGTATTTTTTATATGTACGGAAGACTTAATGCCCCACGACACTTTGGGAATGATAATAGAAATTATTTGCCATCATCTGTGTTTATGGAACAAACACCCTATGAAATCAGTGCTCATGGCTCTTCAAGATTACACCCGACAGCACTCTTCAATAGTAAAATGATGATAAGATCAAGTTCAGGGTGGGACAAAGATTTATATAATTCTCAGTCGTATCAACGTAGTTTCTGCAGTCCTAACCTCACTGGGCACGCGAAGTTTGATGCTGAGGTTCATGATGTGAAAAATCGAATGCCAGAATTCATAAATCAGGTTCAAGTATGGAAACAAGGTGACATCAAAGATCAATTAGAGAGGTTGAATGAGATGAAAGCATCCCCGAGTTTCTTGGAACTAAAACTAAGTCAAGATTCAAGAAATGCTAGAGATTACCAGATGAACAAAGACACAGAAAGTGAACAAAAAATTAATACGAAACTCTCTTTGTCATTGTTCACTTCGTCCTCATCATCCTCAAATTCATCACAACAAGCACAATGTTGTGAAAAGAATAAAGACAATACCCATGTTGAGAGTTTTTGTTTTCAAAATTATGCACCAAGAAATCGTTTGGGCTGA 1107 0.3939 MDETICVSEEDHKSGSSKPSSPSLRRKRSFFDLNEEAVDGGGDDSTSDDDPINSNDISSQEGNLSSNNNSSEEGKERASTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSHNRSMQGRHSIFYMYGRLNAPRHFGNDNRNYLPSSVFMEQTPYEISAHGSSRLHPTALFNSKMMIRSSSGWDKDLYNSQSYQRSFCSPNLTGHAKFDAEVHDVKNRMPEFINQVQVWKQGDIKDQLERLNEMKASPSFLELKLSQDSRNARDYQMNKDTESEQKINTKLSLSLFTSSSSSSNSSQQAQCCEKNKDNTHVESFCFQNYAPRNRLG* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1786 368 SUPERFAMILY Homeodomain-like 88 144 IPR009057 -
Gso12g1786 368 MobiDBLite consensus disorder prediction 51 74 - -
Gso12g1786 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 44 348 IPR044848 GO:0003700
Gso12g1786 368 Pfam Myb-like DNA-binding domain 92 142 IPR001005 -
Gso12g1786 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 146 IPR017930 -
Gso12g1786 368 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 44 348 - -
Gso12g1786 368 MobiDBLite consensus disorder prediction 1 16 - -
Gso12g1786 368 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 145 IPR006447 GO:0003677
Gso12g1786 368 Gene3D - 89 146 - -
Gso12g1786 368 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1786 Gso-Chr12 41499861 41504273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1786 81 158 G2-like Transcription Factor Family AT2G42660 72.289 6.98e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso12g1786 Myb_DNA-binding 5.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1786 - - gmx:102668520 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1786 12 41499861 41504273 Gso11g3077 11 46642795 46646616 GST