Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1774 ATGGAAATGGAAGCCTTTGCCCCACATAGGATTAGTGATGGTTTTCAAGTGAGTTGTGGTGTAATTGGAAATGGGTATGGTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTGGAGGCCCCTGTCAAATTGGAACGCAAGGGTGTTTCTCCTGAGAGAAGCATTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCTCTGTCATTCCAGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTTATTAGACATTTGAAAGATCTGAAAACAAATGCAGCACAAGCTAGTGAAGGCCTAATGATACCAAAGGACAGTGATGAAATAAGAATTGAAGAACAGGAGGGAGGATTGAATGGCTTCCCTTACTCAATCAGGGCATCACTATGCTGTGAATACAAACCCGGGTTATTAACTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCTGAGATTGCAACCTTGGGAGGAAGGATGAAGAATGTGTTTGTGATAATTAACTGCAAAGAACAAAATGTTGAAGATGCTGAGTACCGCCAGTTTCTGGCAGGGTCTGTTCATCAAGCTCTAAGATCTGTGTTGGATAGATTTTCTGTTTCACAGGACATGTTAGAAAGCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTATAGGAGATTTCTTATGA 750 0.4187 MEMEAFAPHRISDGFQVSCGVIGNGYGSSSSLVLDKEKGELVEAPVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKLDKATLLGEVIRHLKDLKTNAAQASEGLMIPKDSDEIRIEEQEGGLNGFPYSIRASLCCEYKPGLLTDIRQALDALHLMIIRAEIATLGGRMKNVFVIINCKEQNVEDAEYRQFLAGSVHQALRSVLDRFSVSQDMLESRKRRRISIFSSSSIGDFL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1774 249 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
Gso12g1774 249 SMART finulus 66 115 IPR011598 GO:0046983
Gso12g1774 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 115 IPR036638 GO:0046983
Gso12g1774 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Gso12g1774 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Gso12g1774 249 PANTHER TRANSCRIPTION FACTOR BHLH30 1 249 IPR045847 GO:0003700|GO:0006355
Gso12g1774 249 Gene3D - 56 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1774 Gso-Chr12 41359129 41361842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1774 47 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.916 3.14e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1774 HLH 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1774 - - gmx:100783322 448.743