Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1763 ATGGAGCAATTACCTCCAAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTCTCTTCACACCAACAGAAGATGCAATTGCCACCTCTTAATAACAACGGCACCATCACCAACAACTATCATCAGCACAATCAGAACCCTTCTTGGGTGGATGAGTTTCTCGACTTCTCCTCGGCCCGGCGCGGCGTTCACCGGCGGTCGGTGAGCGATTCCATCACCTACTTGGATTCACCAGTGAAGTGTGGAGGGAATAAAAACAACAACAACAATGAGAACGAGTTTGACAAGTTTGATGATGAACAATTCATGTCCATGTTCACGGATGAAGTAGTGCTCTCTGGGGTCCCCTTGCCACCACCAACCACCTTGTCCTCCTCTAACCCTTCAAGCCCTTACGATCAGAACTTCATCAATGATGAGAAGGAGAAGAAGGAGGAGCACCACCACCACCACCAATTGAAAAATGAAGCAGATGAGGTTGAAAGCCAATGCAAACAGGAAATTATGCAGCTTCCAAATGACACCAATACTTGTTCTTCCAGCGAGAGAATTACTGACCCCAAGAGAGTCAAAAGAATCTTGGCTAATAGACAATCTGCACAAAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGAAGTGTAACTTCATTACAGGCCGAAGTTTCAGTGCTGTCTCCAAGGGTTGCATTTTTAGATCATCAACGATTGCTTCTAAATGTCGACAACAGTGCTCTCAAGCAAAGAATCGCTGCCCTTGCTCAAGACAAGATCTTTAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGACTTAGGCAAGTTTATTACCAACAAAGCCTCAAGAAGATGGAAAATGCTGCTGGGTCACCATTACCATCACCAAAGCCTATATGTGATGCTCAAACAGAAAAGGAAGCACAACTTCTCAACGCTTGA 954 0.4539 MEQLPPKIPNMSPSWPDFSSHQQKMQLPPLNNNGTITNNYHQHNQNPSWVDEFLDFSSARRGVHRRSVSDSITYLDSPVKCGGNKNNNNNENEFDKFDDEQFMSMFTDEVVLSGVPLPPPTTLSSSNPSSPYDQNFINDEKEKKEEHHHHHQLKNEADEVESQCKQEIMQLPNDTNTCSSSERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYYQQSLKKMENAAGSPLPSPKPICDAQTEKEAQLLNA* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1763 317 SUPERFAMILY Leucine zipper domain 188 242 IPR046347 GO:0003700|GO:0006355
Gso12g1763 317 MobiDBLite consensus disorder prediction 117 136 - -
Gso12g1763 317 Coils Coil 150 170 - -
Gso12g1763 317 MobiDBLite consensus disorder prediction 13 27 - -
Gso12g1763 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 191 206 IPR004827 GO:0003700|GO:0006355
Gso12g1763 317 Pfam bZIP transcription factor 188 232 IPR004827 GO:0003700|GO:0006355
Gso12g1763 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 238 IPR004827 GO:0003700|GO:0006355
Gso12g1763 317 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 317 - -
Gso12g1763 317 SMART brlzneu 184 248 IPR004827 GO:0003700|GO:0006355
Gso12g1763 317 MobiDBLite consensus disorder prediction 142 163 - -
Gso12g1763 317 MobiDBLite consensus disorder prediction 291 317 - -
Gso12g1763 317 CDD bZIP_plant_RF2 189 239 IPR044759 GO:0003700|GO:0006355
Gso12g1763 317 PANTHER BASIC LEUCINE ZIPPER 34 1 317 - -
Gso12g1763 317 MobiDBLite consensus disorder prediction 1 27 - -
Gso12g1763 317 Gene3D - 187 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1763 Gso-Chr12 41229490 41233816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1763 1 265 bZIP Transcription Factor Family AT3G58120 57.288 8.44e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g1763 bZIP_2 3.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1763 - - gmx:100101874 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1763 12 41229490 41233816 Gso11g3098 11 46890660 46894729 GST