Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1755 ATGTTAGAAAAGATGGATGATGGAGAAATCTCAAATGTTTTCCCCCACCAGAACCCTTCAATTGCTGCATCTAACAATCATGACCAGCCTCCTATCTTGAAGAGGAAGAGAAATCTCCCTGGAAATCCAGATCCTGACGCAGAAGTCATAACCCTATCCCCAAAGACTCTGATGGCCACAAACAGATTCGTGTGTGAGATTTGTCTCAAGGGTTTTCAAAGGGACCAAAACCTTCAACTCCATCGCCGAGGTCACAACCTTCCTTGGAAGTTGAAGCAAAGAACAAGCAAAGAAGTAAGGAAGCGAGTTTATGTGTGTCCAGAGAAGACATGTGTCCACCACCACCCTTCAAGAGCTCTGGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAGGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACATGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTCTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAACAAACAGCTAGGGTGAACGCAGCATCAAACATTAGCAACTACAGCATCATGCAAAATCCCGTAGGTTCTGACATGGCAACCCATTTTTCATCATTTTTCAAGCCAAATTCATGCCCTGATCAGGAGCCAGCACCAGGTAACCAAACATCTAATAAGGGTCTATCCCTTTGGATGACTCAAACATCTCAGGCTCATCATGAGACAATGGTTAACAACAATAATTTGCATGAATTTTATCAACTTGGGTCTGTTACAAGCCCAACAGCAATTTATGGTACTAGTGGCAATCCACTTGCTTCATGCTCGAATCCACCGCCCTCTAATTACCAGCTAAATTGGGTGCTTGGAAATAAACTCTCCACCAATGGAAGCCATCAAGAGCTAACTAGCACTGCTTCACTTCCACTAGTCAATAACATTGTTAAGGATAACCCAAACCTTCAACTCATAAGTGTCCCTTCCTTGTATAGCTCACAACACCAATCCCACCAAACAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATCATTATTCCTTGCGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTACTCACAAGTCATTGGAGTGAGGCAGAGAATAATAATAATAATAATAATAATCATAATCATTCGGGTGATTTGTCACAAATGCCCCCTACAAAACGACTCCACGTACAGAATGAAGAGAGTGCATGGGGACAGACTAGGGATTTTCTTGGTGTTGGTGCTGCCAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGAGTTGA 1443 0.4414 MLEKMDDGEISNVFPHQNPSIAASNNHDQPPILKRKRNLPGNPDPDAEVITLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWRCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEQTARVNAASNISNYSIMQNPVGSDMATHFSSFFKPNSCPDQEPAPGNQTSNKGLSLWMTQTSQAHHETMVNNNNLHEFYQLGSVTSPTAIYGTSGNPLASCSNPPPSNYQLNWVLGNKLSTNGSHQELTSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSSLFLASIGLKCNSPGQDGNKFCGMYGSSSVLTSHWSEAENNNNNNNNHNHSGDLSQMPPTKRLHVQNEESAWGQTRDFLGVGAANHLPPFINQRMDLS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1755 480 Gene3D Classic Zinc Finger 97 187 - -
Gso12g1755 480 MobiDBLite consensus disorder prediction 13 27 - -
Gso12g1755 480 MobiDBLite consensus disorder prediction 1 48 - -
Gso12g1755 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 478 - -
Gso12g1755 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Gso12g1755 480 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Gso12g1755 480 MobiDBLite consensus disorder prediction 419 441 - -
Gso12g1755 480 PANTHER F-BOX ASSOCIATED PROTEIN 5 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1755 Gso-Chr12 41160475 41164139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1755 30 465 IDZ Gene Family AT1G03840 50.844 1.58e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1755 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1755 K25870 - gmx:100778666 983.015