Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1743 ATGAGCAGTGTCTGTGCCAAGCAGCACAAGTTTTACCCCTCTCACCAACTCCTTTCTCCAAAGAAAACCCTCAGAGAAATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGTGCCGCCGCATGCGTCGGCGGCACCGACGTGTACTCCTCCGAGGAGACCATGCTGCAAAAGTTCCTCCCTTCCAACGATTCTGACGAGGACGACCCTTACTCCTCAGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCGGTGCACCCGAAGCCGGAGCCACGACTGGACCGACTGCCCCTTCGCCCATCCGGGTGAAAAGGCACGCCGCCGTGACCCACGGCGGTATCACTACTCAGGAACAGTCTGTCCTGAGTATCGTCGCGGAGGGTGCAGCCGTGGCGATGCATGCGAATACGCCCATGGCGTGTTCGAATGCTGGCTGCACCCTTCCAGGTACAGAACGGAGGCCTGTAAGGATGGCAGGAACTGCAAGAGAAAGGTGTGTTTTTTCGCACACACCCCTCGCCAGCTGAGAATTTTGCCGGTAACAACATCTTCACCCTCTTCAAATGACATGCCATGCAAGAAGAACCTTAACAAACTCTTAAACCATGCTTCAAAATCAAACAACAACAACAACAACAACTGTTGTTTGTTTTGCCATTGTGGTGCTTCCTCTTCAGTTTCTCCAACCTCCACACTCTTCGGCATGTCGCATTTCTCGCCACCAGTATCACCATCCTCGTCCTCTTCACCACCTCCTTCTCCATTGAAACCCCGAAGCGTGGTTTCTCCTATTTCTCCAATTTCCCGTTACAGTGCTGTGAATATGAACCCTCATCACGGGGTGGTGAGTTACAAAGACATGTTCGCTGAGTTGGTGAATTCTTTGGAGGGTTTGAGTTTCAACGAGGGTTCTCCTGTTTCTGGTGCTAAAGCACCGAACTTTCCTTGGCTTGATGTTTCTCTTGAGGAACAGCAACAACAACAAAATCCTTTCATTGTTTCTTCTTTTGGCTGCGAAGATAAACAGAACCAGTTTATTTTTTCACCACCGTCCATTCAGACACCGACAAATGGGAAGTTCTGTCGCAACAGATTCATGGGCAACGACAACAAGGTTGTCGGTGGTGCTGACGTTAATGGCCCAGATCTCGCGTGGGTGAACGAGTTGCTGATGTAA 1179 0.5115 MSSVCAKQHKFYPSHQLLSPKKTLREIDIPPRKLLTRRAAACVGGTDVYSSEETMLQKFLPSNDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRILPVTTSSPSSNDMPCKKNLNKLLNHASKSNNNNNNNCCLFCHCGASSSVSPTSTLFGMSHFSPPVSPSSSSSPPPSPLKPRSVVSPISPISRYSAVNMNPHHGVVSYKDMFAELVNSLEGLSFNEGSPVSGAKAPNFPWLDVSLEEQQQQQNPFIVSSFGCEDKQNQFIFSPPSIQTPTNGKFCRNRFMGNDNKVVGGADVNGPDLAWVNELLM* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1743 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 140 IPR000571 GO:0046872
Gso12g1743 392 MobiDBLite consensus disorder prediction 245 260 - -
Gso12g1743 392 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872
Gso12g1743 392 SMART c3hfinal6 150 173 IPR000571 GO:0046872
Gso12g1743 392 SMART c3hfinal6 115 141 IPR000571 GO:0046872
Gso12g1743 392 Gene3D - 115 179 - -
Gso12g1743 392 MobiDBLite consensus disorder prediction 241 261 - -
Gso12g1743 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 391 - -
Gso12g1743 392 PANTHER UNKEMPT FAMILY MEMBER 26 391 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1743 Gso-Chr12 41057790 41059330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1743 45 256 C2H2 Transcription Factor Family AT5G12850 43.694 5.77e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso12g1743 zf-CCCH 5.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1743 K23047 - gmx:100787049 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1743 12 41057790 41059330 Gso11g3116 11 47067150 47068673 GST