Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1739 ATGGGTCAACAACAACAGGGAAGTCAACCTTCTCCAACCAAAGTCGAAAGAAAGATTGTAGAGAAAAACAGGAGAAGCCAGATGAAGAACCTCTATTCCGAACTCAACTCTCTTCTCCCTACCCGTAATCCCAAGGAAGCGATGTCACTGCCTGATCAAATAGATGAAGCAATCAACTATATCAAAAGCCTAGAGACAAAAGTGAAGCTGGAGCAGGAGAAGAAAGAAAGGTTAAAGGAAAGGAAGAGAACTCGTGGTGGCTGTTCGAGTTCTTCTGAAGCACAAGGAAGCCTGAAATCGCCAAATATCCAGATTCACGAAACGGGAAATTTGCTTGAAGTCATTCTAACATGTGGGGTCGATAGCCAGTTCATGTTCTGTGAAATTATTCGAATTTTGCATGAAGAGAACGTCGAGGTCATCAATGCCAATTCTTCAATGGTCGGAGATTTAGTGATTCATGTTGTGCACGGGGAGGTTGAGCCATCTATCTATCAATTCGGAGCGACCAAAGTGAGTGAGAAGCTGAAATGGTTTATGAACGGATCCTTCAGTGATGTGGAAATGGAGCCTGAATTAATGTGGAATTTTAAAATTGATGCTACTGAGCCGTGGGGGCTTCTAGATGATCTTACACTGGACAATGTCTTACCACCAAATACTTTGTAA 669 0.426 MGQQQQGSQPSPTKVERKIVEKNRRSQMKNLYSELNSLLPTRNPKEAMSLPDQIDEAINYIKSLETKVKLEQEKKERLKERKRTRGGCSSSSEAQGSLKSPNIQIHETGNLLEVILTCGVDSQFMFCEIIRILHEENVEVINANSSMVGDLVIHVVHGEVEPSIYQFGATKVSEKLKWFMNGSFSDVEMEPELMWNFKIDATEPWGLLDDLTLDNVLPPNTL* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1739 222 Gene3D - 3 89 IPR036638 GO:0046983
Gso12g1739 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 187 IPR015660 GO:0003700|GO:0006357
Gso12g1739 222 MobiDBLite consensus disorder prediction 72 87 - -
Gso12g1739 222 MobiDBLite consensus disorder prediction 1 25 - -
Gso12g1739 222 MobiDBLite consensus disorder prediction 72 100 - -
Gso12g1739 222 Coils Coil 54 81 - -
Gso12g1739 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 83 IPR036638 GO:0046983
Gso12g1739 222 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Gso12g1739 222 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 187 - -
Gso12g1739 222 SMART finulus 18 70 IPR011598 GO:0046983
Gso12g1739 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1739 Gso-Chr12 41010214 41011556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1739 15 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.938 6.84e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1739 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1739 - - gmx:100784042 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1739 12 41010214 41011556 Gso11g3124 11 47137675 47138671 GST