Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1738 ATGTCGCCTAAGGCAAATTGCAAAAACTGTTGGGAAGATACAATTAGAGTTTTGCAAAACGTAGCTGATGGAATTTTATATCTACATGAGGGTTGGGAAGTTGAGGTCTTGCATAGGGACATTAAAGCTTGTAATGTATTGCTTGACAAGGACATGAATGCTAGGTTGGGGGATTTTGGGCTTGCAAGGCTGCATCACCATGAACATGTGGCTGAAACAACAAGAGTGATAGGGACTCTGGGGTACATGGCACCTGAACTTGTCCGAATCGGGCGACCATCAGCTGCATGTGATGTGTATAGTTTTGGAGTATTGGTTTTAGAAGTGGTGTGTGGGCGAAGATCCATCATAGCAGATCAGCCACCATTGGTTGATTGGGTGTTTTCCCTTGTGGAGAATGGGGAGTTGAGTTGTGCTATTGACGAGCATTTGAAGGGTCAAAGTGGATACAATGCTGAGGAAGCTAAGAGGCTGCTTCATTTGGGTTTGTTATGTGTTAGTACAGACCCTGGTGTTAGGCCAACAATGAGGCAGGTGGTGAAAGCATTGGAGGGAATAAAATGCACGGAGTGTAACAAAGATTGCATCCATTTTGCTCTGCTTGGAAAAATAAACTCAGCAGCATCATGGTCTAAGAGTTCTACAAGTTCTGCTAATGTAAATTATCCTACCTTTGATGAAATTTTGCAGGCCAAGTTTTACTCTACAGCATCTTTAAGCGTCTCTTGTCCCAGTCCACAGCCAGAGTCAGAGTTTGTCTCAGAAGGAAGGTGA 774 0.438 MSPKANCKNCWEDTIRVLQNVADGILYLHEGWEVEVLHRDIKACNVLLDKDMNARLGDFGLARLHHHEHVAETTRVIGTLGYMAPELVRIGRPSAACDVYSFGVLVLEVVCGRRSIIADQPPLVDWVFSLVENGELSCAIDEHLKGQSGYNAEEAKRLLHLGLLCVSTDPGVRPTMRQVVKALEGIKCTECNKDCIHFALLGKINSAASWSKSSTSSANVNYPTFDEILQAKFYSTASLSVSCPSPQPESEFVSEGR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1738 257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 36 48 IPR008271 GO:0004672|GO:0006468
Gso12g1738 257 Gene3D Transferase(Phosphotransferase) domain 1 4 200 - -
Gso12g1738 257 Pfam Protein kinase domain 14 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1738 257 SUPERFAMILY Protein kinase-like (PK-like) 11 184 IPR011009 -
Gso12g1738 257 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1738 257 PANTHER LECTIN RECEPTOR KINASE 8 240 - -
Gso12g1738 257 SMART serkin_6 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1738 257 PANTHER - 8 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1738 Gso-Chr12 40990332 40991531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1738 10 184 Receptor kinase-like Gene Family AT3G55550 49.721 1.01e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso12g1738 Pkinase 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1738 - - gmx:112998578 514.998