Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1728 ATGGCCTTAGACCAGTATTTTGAGGAGGCTATGCCCCAGTTGGATTCCTTCGAAGATAAATCGTTTCTCGAAACATGGAAATGTGACAGTGACGATATCGCAGATTCTGATAGAAATGCCTCTGGTGTCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTTACTCTTTGTGGCCATCTCTACTGCTGGCCCTGTATTTACAAATGGCTTAATTTCCTAAGTGCCTCTTGTGAAAATGAAGAGAAGCAACAATGTCCAGTATGCAAATCAGAAATCTCACAGTCATCCCTTGTTCCCCTATACGGCCGCGGCCAAACTGAGTTACCTTCTAAAGGCAAAGGCCACCAAGTAGGGGTTGTCATACCAAGAAGACCCCTTGGTCCTTCACTTGATTCTGTTACTGTTTCCCGACCTATTTCTCACGTTTATCATCGACACTATCCGAATCAACCTCAACAACTCAACTTAATTCCTGGCAGTTACACTTCAATGTTCAACACAGGTGGTTCACTAGCAAATGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGGAACCAGATGACTAACACATACACATACCCGAATTCATATGATCTTTCAGGGAACAGTAATCCAAGGATCAGAAGGCATTTAATGCAAGTTGATAGCTCACTCAATAGAATCACTTTTTTCCTCCTTTGTTGCATAGTTTTGTGCCTTCTCTTATTCTGA 747 0.423 MALDQYFEEAMPQLDSFEDKSFLETWKCDSDDIADSDRNASGVFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFLSASCENEEKQQCPVCKSEISQSSLVPLYGRGQTELPSKGKGHQVGVVIPRRPLGPSLDSVTVSRPISHVYHRHYPNQPQQLNLIPGSYTSMFNTGGSLANAFDTTYGVFGEMIYARIFGNQMTNTYTYPNSYDLSGNSNPRIRRHLMQVDSSLNRITFFLLCCIVLCLLLF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1728 248 ProSiteProfiles Zinc finger RING-type profile. 46 93 IPR001841 -
Gso12g1728 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 248 - -
Gso12g1728 248 SUPERFAMILY RING/U-box 42 105 - -
Gso12g1728 248 CDD RING-HC_AtRMA_like 44 94 - -
Gso12g1728 248 SMART ring_2 46 92 IPR001841 -
Gso12g1728 248 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Gso12g1728 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso12g1728 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 107 IPR013083 -
Gso12g1728 248 Pfam Zinc finger, C3HC4 type (RING finger) 46 92 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1728 Gso-Chr12 40878606 40881273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1728 29 248 C3H Transcription Factor Family AT4G28270 37.885 1.74e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1728 K10666 - gmx:100780643 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1728 12 40878606 40881273 Gso11g3136 11 47250522 47252680 GST