Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1721 ATGGCTGCAGCGAACAGTGGCAAATTCGATGTGGGAGATGAAACTCACAAGAATTCACGAAAGGGTAGTGAAAGCCAAGATTGGGAGATTGAGAAGGGAAAGTGCGTGGATTGTTCAAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGTTTCCATCTCATACAATAGACCCTTCAAGAAAATCCGAAGCCCCGATCGCCAAAACACAAACCAATCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTATTCCTTTTCAACCTTCACCTCTCTCTAATCCTCCTTCAAGAATAGTGTTCCCTTTTGCCTTTGATGGTTCCCAACAGCACCCCATGCAATTCCCTCACCAATTTGGAACCACAAACCCACCTTTCCCTCACCCTTCTCTCCAAAACCAGCAACACCAGATGATATCATTTGGGTCTTCCCAACAACATAATAATCTCGCATATCCACCCATCATAGCCAGTGATTCTTCTTCACTTCTACATCAACATCATCATCATCAACAGCAGCATCAGCAGCACCAGCAGCAACTTCTTCAGTATTGGAGTGACGCGTTGAATCTAAGTCCAAGAGGAATGTTAACAAGATTGGGACCAGATGGAAGGCCATTGTTTAGGCTTCCAACACAGCCCATAAACACAACAAAACTCTATAGAGGAGTGAGGCAACGCCATTGGGGGAAATGGGTCGCTGAAATCCGTCTTCCACGAAACAGAACGCGTCTCTGGCTAGGCACATTTGACACGGCCGAAGACGCCGCCATGGCCTACGACCGAGAAGCCTTCAAGCTACGAGGAGAGAATGCTAGACTCAATTTCCCAGAATTGTTCCTCAACAAGGACAAAAAAGAAGAAGAACAACAACAAGAACAAGAAGCTTCTTCGCCAGTTCTTTCAGCTATTGCAAAGCAGCATGAACCTTCTAGTGAACACCGTGACGTCCCCATAGAAGAGTCTAATGAGAATGATTCGGGTGACGCCACGGTGAGCGATGACCAGGTTCATGCTACTACTGAGAGTTCCGAAGGAGTTTCTCAGGAAATGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCTGCTTGGGGTCCTGGTAGTCCCATGTGGGATGATTTGGATGCCACCAATAATCTTCTTTGCCAATCACACATTCCTTTTTCCAATCCCAATCAACAAGAACTCAATGATGCTGAGAGACAAGAACAAAACACTGGACCAGGTTACTTGTGGAAGGATCAGGATTGA 1284 0.4564 MAAANSGKFDVGDETHKNSRKGSESQDWEIEKGKCVDCSSSQRRQWKPVFDDVSISYNRPFKKIRSPDRQNTNQSSSSSSSSSSSSSSFSSSIPFQPSPLSNPPSRIVFPFAFDGSQQHPMQFPHQFGTTNPPFPHPSLQNQQHQMISFGSSQQHNNLAYPPIIASDSSSLLHQHHHHQQQHQQHQQQLLQYWSDALNLSPRGMLTRLGPDGRPLFRLPTQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKKEEEQQQEQEASSPVLSAIAKQHEPSSEHRDVPIEESNENDSGDATVSDDQVHATTESSEGVSQEMVWGEMSAWFNAIPAAWGPGSPMWDDLDATNNLLCQSHIPFSNPNQQELNDAERQEQNTGPGYLWKDQD* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1721 427 SMART rav1_2 228 291 IPR001471 GO:0003700|GO:0006355
Gso12g1721 427 Gene3D AP2/ERF domain 228 286 IPR036955 GO:0003700|GO:0006355
Gso12g1721 427 MobiDBLite consensus disorder prediction 293 356 - -
Gso12g1721 427 ProSiteProfiles AP2/ERF domain profile. 228 285 IPR001471 GO:0003700|GO:0006355
Gso12g1721 427 MobiDBLite consensus disorder prediction 1 43 - -
Gso12g1721 427 CDD AP2 227 287 IPR001471 GO:0003700|GO:0006355
Gso12g1721 427 MobiDBLite consensus disorder prediction 57 101 - -
Gso12g1721 427 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 410 - -
Gso12g1721 427 MobiDBLite consensus disorder prediction 316 330 - -
Gso12g1721 427 MobiDBLite consensus disorder prediction 67 96 - -
Gso12g1721 427 MobiDBLite consensus disorder prediction 396 427 - -
Gso12g1721 427 SUPERFAMILY DNA-binding domain 228 286 IPR016177 GO:0003677
Gso12g1721 427 MobiDBLite consensus disorder prediction 332 356 - -
Gso12g1721 427 MobiDBLite consensus disorder prediction 10 38 - -
Gso12g1721 427 Pfam AP2 domain 229 277 IPR001471 GO:0003700|GO:0006355
Gso12g1721 427 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 410 - -
Gso12g1721 427 PRINTS Ethylene responsive element binding protein signature 229 240 IPR001471 GO:0003700|GO:0006355
Gso12g1721 427 PRINTS Ethylene responsive element binding protein signature 251 267 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1721 Gso-Chr12 40809729 40812091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1721 193 401 AP2-EREBP Transcription Factor Family AT2G20880 52.113 1.35e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g1721 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1721 - - gmx:100101898 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1721 12 40809729 40812091 Gso11g3143 11 47308572 47310812 GST