Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1716 ATGGGCTGTTGTGTCTCAACAAGCAGTCAGAGTACTTGTAGTAGCAGGAGCAATGGAGACACGATCGCTCCAACCTGTCTAGAGATTGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATCCTCTGATCATGTTGTGTCTCTGCATCAATTCCCCTCATTACCAAACAGAATTTTCACCAATGGAAAGAGCAGGTCTTCTTGCATATTTACGCAGCAGGGTCGGAAGGGTATTAATCAGGACGCCATGATTGTGTGGGAAGATTTCATGCCCGAAGATGTAACCTTTTGTGGTGTCTTTGATGGTCATGGTCCACACGGTCACCTTGTCGCATGCAAAGTCAGGGAAGCCTTGCCGCTGAAACTTCTTTCATTTTTGCATTCCTCCGAATCAGGGCAAAATGGTTCAGGTAAAGCTTGTTTTAGGGGCAACATAAAGCCTGAAAGTGGAGAATCTGAGAAAGATTTGTCTGCTGAAGATAACGAAAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGTTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGAAGCACAGCTGTCACTATAGTGAAGCAGGGTTCCAATTTGTTCATGGGAAATATTGGGGATTCCCGAGCAATCATGGGATCAAAGGACAGCAACCACTCCATGGTGGCAATTCAGTTGACCATTGATTTGAAACCTGATTTGCCAAGGGAAGCAGAAAGAATCAAACGGTGCAAGGGTAGGGTATTTGCGTTAGAAGATGAGCCAGAAGTTCATAGGGTATGGTTGCCTTTTGATGATGCACCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAATATGGTGTGATTTCTATACCTGAATTTTCTCATCGGCTGCTAACAGACAAAGATCAATTCATTGTTCTTGCCTCAGATGGGGTCTGGGATGTTTTGAGCAATGAAGAGGTGGTTGGGATAGTATCTTCAGCGCCAACTCGATCATCAGCAGCGAGGATTCTGGTGGATTCCGCGGCCCTAGAGTGGAAACTCAAATATCCTACTTCAAAAATGGATGACTGTGCAGTTGTGTGCCTATTTTTGGATGGAAAAATGGACTCAGAATCTGATTGTGATGAGCCATGCTTCTCTTCTGCAACCATCCAGAGCAACCATTCAGAAAATCCGGTTGAGTCAGATGACGGTCAAAAGCCTGAGCCATCTTTGCGAAGGAACTTTACTGTGAGATCCTCAGAAGAAAATGAAACCTGTGGAGGAGGAGTTGGAGGGGTATTTGTTGATGTTGACGATGGAACATCCGCAGCCGAAGATCAAAACTGGTCAGGTCTGGAGGGTGTCACGCGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCTGAGGAAAGGCCAAACTCTTGA 1425 0.4491 MGCCVSTSSQSTCSSRSNGDTIAPTCLEIGFCGQKSARRTSSDHVVSLHQFPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLVACKVREALPLKLLSFLHSSESGQNGSGKACFRGNIKPESGESEKDLSAEDNENSMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGNIGDSRAIMGSKDSNHSMVAIQLTIDLKPDLPREAERIKRCKGRVFALEDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGVWDVLSNEEVVGIVSSAPTRSSAARILVDSAALEWKLKYPTSKMDDCAVVCLFLDGKMDSESDCDEPCFSSATIQSNHSENPVESDDGQKPEPSLRRNFTVRSSEENETCGGGVGGVFVDVDDGTSAAEDQNWSGLEGVTRVNSLVQLPRFSEERPNS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1716 474 SMART PP2C_4 50 368 IPR001932 -
Gso12g1716 474 PANTHER ALPHABET, ISOFORM E-RELATED 1 462 - -
Gso12g1716 474 MobiDBLite consensus disorder prediction 147 161 - -
Gso12g1716 474 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Gso12g1716 474 MobiDBLite consensus disorder prediction 137 161 - -
Gso12g1716 474 CDD PP2Cc 65 370 IPR001932 -
Gso12g1716 474 Gene3D - 58 378 IPR036457 -
Gso12g1716 474 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 462 - -
Gso12g1716 474 SUPERFAMILY PP2C-like 59 372 IPR036457 -
Gso12g1716 474 Pfam Protein phosphatase 2C 153 342 IPR001932 -
Gso12g1716 474 MobiDBLite consensus disorder prediction 389 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1716 Gso-Chr12 40745890 40751024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1716 1 474 PP2C-type Phosphatase Gene Family AT1G03590 67.573 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1716 - - gmx:100777448 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1716 12 40745890 40751024 Gso11g3149 11 47366227 47368897 GST
Gso12g1716 12 40745890 40751024 Gso12g0899 12 10276400 10280180 PCT
Gso12g1716 12 40745890 40751024 Gso6g2431 6 45980563 45983963 PCT
Gso12g0899 12 10276400 10280180 Gso12g1716 12 40745890 40751024 PCT
Gso6g2431 6 45980563 45983963 Gso12g1716 12 40745890 40751024 PCT