Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1710 ATGGGTGAGGAGAGATCTGGTTTACAGAACAAAAGAGTGAAGATCCATGGAGAAGTTCTATTGGGGTTTATAATTATGTTGATCTGCACAATTCAGTTTTCAGTTGCAGACACTGATCCCGTTGATGTCGCTGCAATTAATAGATTGTATACTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTTCTAGTGCGGGAGACCCGTGCGGACAAGGGTGGCAAGGCGTTCAATGCAATGGCTCAGTCATACAAGAAATAATTCTGAATGGTGCAAACTTGGGAGGAGAACTGGGTGATAGCTTGGGAAGTTTTGTTTCTATCAGAGCAATAGTTCTAAACAACAATCACATTGGAGGAAGTATTCCATCCAGTTTGCCAGTCACATTACAGCACTTCTTTCTATCAGATAACCAGTTCACTGGAAGTATTCCAGCCTCTTTATCCACATTGACCGAACTGACTGACATGTCTCTTAACGACAATCTTCTAACAGGAGAAGTACCAGATGCATTTCAGTCTCTTATGCAATTGATCAATCTAGATTTATCTAATAATAATTTGAGTGGGGAATTGCCTCCATCTATGGAGAATTTGTCAGCTCTGACCAGCGTACATTTACAGAACAATAAACTGTCTGGGACCCTGGATGTTTTACAAGACCTTCCACTGCAAGATTTGAATGTTGAGAACAACCAGTTTGCTGGACCAATACCTCCGAAGTTGTTAAGCATCCCTAGCTTCAGAAAAGATGGAAACCCATTTAATCTCAATGACAATTCTACTATAGCCCCAGCACATCCACCACATTCTCCAGTGACAGCATCACCAACAGGAACTGTGGTTTCTGTTACGCCGTCGTCTGGACGTGTACCAACTAAACCGACCAAGGGACCAACTGCAGCAAAGGAATCAAATTCTGGGAAATCGAAAAAAAACACCAAAAAGGTGGTTTGGATATCTATTTCTGGTATATTGGTGTTTATAATTCTAGTACTGGGACTTCTTCTCTTTGTTCCAAGATGTAGCAGAAGAGAACGGGTTAACAGAAGTTCCAAGCAACATCAAGTTGGAGCATATGGAGGTGAAAGACAGAATCCTAGGGACTATGGGGCTTTTGTCCAACCACCTAGTCAAACTGAGAAAGTACCGAAAGGTGCTGTGGTGAGGCTGAAAGGGGATCATCAAGAAGAGGCAAGGAGATTGAGGACTATTCCAAAGCCGCAAGGCGAGCAAGAGAAGGATGAACAAAGAATGGAAACAATCCCAAAGCTGTTAGAGCATGAGATAGATATGAGTTCACTAGATGTATTTTCAATGCCTTCTCCACCGCCACCTCCTCCACCACTTCCTGCTGAGAGGGTGATTGTTGAACCAGCCTCATTCCACAAAGAGGCTAACATCAATCCTCCCAAAAAAAGTCCTGTTCCTCCCACTTTTGCGAAAACTTTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGTTTAGGCATGCTAGGGAGTGTGTATAGGGCAGAGCTTCCAGATGGAAAGATACTTGCTGTGAAGAAACTAGACAAGAGAGTTTCTGATCACCAAACAGATGATGAGTTTCTTGAATTGATAAACAGTATTGACAGAATCCGGCATCCAAATATTGTTGAGCTTATTGGGTACTGTGCAGAGCATGGTCAAAGGCTTCTGATTTATGAGTATTGCAGTAATGGGTCGCTGCAGGATGCACTCCATTCACATGATGAATTCAAAACAAGACTGTCATGGAATGCTCGCATTCGGATAGCACTCGGGGCAGCTAGATCCTTAGAGTACTTGCATGGGCAGTTTCAGCCACCAGTTGTACACAGAAATTTCAAGTCTGCTAACATTCTCCTCTATGATGATGTTTCTGTGCGTGTATCTGATTGTGGTTTGTCTCCACTAATAACTAAAGGTTCTGTAAGTCAGCTCTCAGGACAACTGCTAACAGCATATGGCTATGGGGCTCCAGAGTTTGAGTCAGGAATTTACACATACCAGAGTGATGTTTACAGCTTTGGAGTAGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCTATGACAGGACACGCCCTCGAGGGGAGCAGTTTCTGGTGAGGTGGGCTATTCCTCAGCTTCATGACATTGATGCATTATCAAAGATGGTTGATCCCTCTCTAAAAGGAAATTACCCTGCCAAATCATTGTCAAATTTTGCAGACATTATTTCAAGATGTGTTCAGTCAGAGCCAGAATTTAGGCCAGCAATGTCAGAAGTGGTCTTGTACTTAATAAATATGATAAGAAAGGAAAATCAGAAAAGTGAATCAAATGAATAA 2355 0.4251 MGEERSGLQNKRVKIHGEVLLGFIIMLICTIQFSVADTDPVDVAAINRLYTALGNPVLPGWVSSAGDPCGQGWQGVQCNGSVIQEIILNGANLGGELGDSLGSFVSIRAIVLNNNHIGGSIPSSLPVTLQHFFLSDNQFTGSIPASLSTLTELTDMSLNDNLLTGEVPDAFQSLMQLINLDLSNNNLSGELPPSMENLSALTSVHLQNNKLSGTLDVLQDLPLQDLNVENNQFAGPIPPKLLSIPSFRKDGNPFNLNDNSTIAPAHPPHSPVTASPTGTVVSVTPSSGRVPTKPTKGPTAAKESNSGKSKKNTKKVVWISISGILVFIILVLGLLLFVPRCSRRERVNRSSKQHQVGAYGGERQNPRDYGAFVQPPSQTEKVPKGAVVRLKGDHQEEARRLRTIPKPQGEQEKDEQRMETIPKLLEHEIDMSSLDVFSMPSPPPPPPPLPAERVIVEPASFHKEANINPPKKSPVPPTFAKTFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELPDGKILAVKKLDKRVSDHQTDDEFLELINSIDRIRHPNIVELIGYCAEHGQRLLIYEYCSNGSLQDALHSHDEFKTRLSWNARIRIALGAARSLEYLHGQFQPPVVHRNFKSANILLYDDVSVRVSDCGLSPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRTRPRGEQFLVRWAIPQLHDIDALSKMVDPSLKGNYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLINMIRKENQKSESNE* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1710 784 Gene3D Transferase(Phosphotransferase) domain 1 573 784 - -
Gso12g1710 784 Pfam Leucine rich repeat N-terminal domain 42 79 IPR013210 -
Gso12g1710 784 MobiDBLite consensus disorder prediction 253 312 - -
Gso12g1710 784 Gene3D Phosphorylase Kinase; domain 1 461 572 - -
Gso12g1710 784 Gene3D Ribonuclease Inhibitor 42 267 IPR032675 -
Gso12g1710 784 SUPERFAMILY L domain-like 41 246 - -
Gso12g1710 784 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 26 783 - -
Gso12g1710 784 PANTHER OS01G0253100 PROTEIN 26 783 IPR045271 GO:0004714|GO:0006468
Gso12g1710 784 ProSiteProfiles Protein kinase domain profile. 495 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1710 784 SUPERFAMILY Protein kinase-like (PK-like) 470 769 IPR011009 -
Gso12g1710 784 Pfam Protein tyrosine and serine/threonine kinase 498 767 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1710 Gso-Chr12 40681416 40688255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1710 33 780 Strubbelig Receptor Gene Family AT4G03390 62.024 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gso12g1710 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1710 - - gmx:100811490 1414.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1710 12 40681416 40688255 Gso11g3155 11 47416688 47423423 GST
Gso12g1710 12 40681416 40688255 Gso12g0888 12 9968131 9975798 PCT
Gso12g1710 12 40681416 40688255 Gso6g2436 6 46052354 46059935 PCT
Gso12g0888 12 9968131 9975798 Gso12g1710 12 40681416 40688255 PCT
Gso6g2436 6 46052354 46059935 Gso12g1710 12 40681416 40688255 PCT