Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1694 ATGGCTCATCAGATTAGTCAGGAGCCACTGAAGATCTTAGAGCAATGTAGAGTTACTCCAAAACCAGGCTCAGTTCCCTCTACCACTCTTCCCCTTACCTTCTTTGACGTTCCATTTTTCTTCAGCCCACCCTTCAAACGCATCTTCTTCTACGAGTTTCCTCATCCCACTCTCTACTTTCTCCAAACAACACTTCCCATTCTGAAACACTCTCTTTCCCTCACTCTCCAACACTTCTTCCCCTTCTCCTCCAACCTCATCGTTCCTCCACAACAACCCCATCTCTCTCACATCCGTTACCTTGATGGAGACTCTCTCTCCTTCACCGTTGCTGAGTCCACTGCAGACTTCACTCTCCTCACATCTCATTCACCCCAAGATGCTCAAAATTGGCACCCTCTTGTTCCTACCTTGCCTTCCCCACTTGTGGAGCAAGATGGCACACGTGTGTTCCCTCTCATGGCCATTCAGGTCACCGTTTTCCCAAACTCAGGCTTCACCATGTGTCTTACGTTCCACCACATTGCTACCGATGGCAAATCACTTCATCATTTCATCAAGTTTTGGGCCTCTCTTTGCAAAGCAAAAGGGAACTTGGCTTCTTCCCTTGAAACTTCTCTGTCTCTTCCTTCACACGAGAGGGACATAGTTAAAGACCCAAAGGGCCTTAAGCTCAATTACTTTCAAGAACTTGAACATCACGAGTCAAGAAGCGTGGAGTTTGCGGGGCTCGTTGGAGATGTTTTCACTAACACCGTTCGCTACACTGCTCTATTGACTCATGAACAAGTTGAGAAACTGAAGAAGTGGGTCTCTATTAAATGTGCCAGCTACACTGATGGCACAGTGCACATATCAACCTATATGGTGCTATGTTCCTTGTTCTGGGTTTGCATGATTAGATCAGAGGAGAGCAAAAGCAATAGTGTTGCACAAAACAACGATGAGGATGAAGTGTGCTACTTGCTAATTCCAGCAGATTGTCGTCATCGTCCTGAATTTTCATTACCTTCAACGTACTTTGGGAATTGTTTAGCCACTTGCTTTGTGGCAATGAAGAAGAGTGAGCTAGTGGGAGAAAATGGGATCGTTGGAGTGGCAAATGCAATTGAAAGACTAATTAGAGATTTGAAGAATGACCCTTTGAGAACGGTTGAAACGGCGATGCCAGAATTTAAACAATTTGGTAAATCTACCTTAATAGTTTCGGGGACACCAAAGTTTTCTGTGTACCAGACTGATTTTGGATGGGGCAAGCCTAAGAAATCTTTTGCAGCTTATATTGAATCTTCGGGATGGATTTGTCTTTCTGATTGTAGAGACGAAAAAGGAGGAATAGAGGTTGCATTGACACATGAAAGGATTCGGATGAATAGGTTCATCACTATCTTTGAAGAGCAACTCCATAATATTAATAAATTCTGA 1425 0.44 MAHQISQEPLKILEQCRVTPKPGSVPSTTLPLTFFDVPFFFSPPFKRIFFYEFPHPTLYFLQTTLPILKHSLSLTLQHFFPFSSNLIVPPQQPHLSHIRYLDGDSLSFTVAESTADFTLLTSHSPQDAQNWHPLVPTLPSPLVEQDGTRVFPLMAIQVTVFPNSGFTMCLTFHHIATDGKSLHHFIKFWASLCKAKGNLASSLETSLSLPSHERDIVKDPKGLKLNYFQELEHHESRSVEFAGLVGDVFTNTVRYTALLTHEQVEKLKKWVSIKCASYTDGTVHISTYMVLCSLFWVCMIRSEESKSNSVAQNNDEDEVCYLLIPADCRHRPEFSLPSTYFGNCLATCFVAMKKSELVGENGIVGVANAIERLIRDLKNDPLRTVETAMPEFKQFGKSTLIVSGTPKFSVYQTDFGWGKPKKSFAAYIESSGWICLSDCRDEKGGIEVALTHERIRMNRFITIFEEQLHNINKF* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1694 474 PANTHER - 10 472 - -
Gso12g1694 474 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 10 472 - -
Gso12g1694 474 Gene3D - 249 471 IPR023213 -
Gso12g1694 474 Gene3D - 10 242 IPR023213 -
Gso12g1694 474 Pfam Transferase family 14 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1694 Gso-Chr12 40571240 40573234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1694 52 457 Monolignol Biosynthesis Gene Families AT5G48930 23.023 2.39e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1694 - - gmx:100797294 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1694 12 40571240 40573234 Gso11g3175 11 47541366 47543146 GST