Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1686 ATGGATTTTGACCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCTTGTGACGCTGTCCCTTCCCTCTTCCTCATCGAATCCGACCACATCCCTCCACCCAACTACTGTCAGAGTTTCAAGGCCAGCGACTTCGACATCTCTGTAAGAAGAGACGTTGTCTCTTTGATCTCGCAGTTGTCCTGCACCTTCGATCCGGTTCTTCCTTACTTAGCTATTAACTACTTGGATCGCTTCCTCGCTCACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTCCTTGCAATCTCTTGCTTTTCTCTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAGGTTCTTATGAATCATGGTGATGGGGGTGCCATTTTTGAGGCACAGACAATTCAAAGAATGGAAGGCATTGTCTTGGGGGCTCTACAATGGCGAATGCGTTCGATCACCCCCTTCTCTTTCATTCCCTTCTTCGTCAACTTGTTCAGGCTTAAAGACCCTGCATTGAGGCAGGTTCTGAAGGATGGAGCATCAGAAATCATACTCAAGTCACAAAGAGAGATAAAGGTCTTGGAATTCAAGCCATCTACAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCGTGCTTCTTAAGAGCAATATCCGATTGTTCATATATTAATAAGGAAACTGTGGTGCAATGTTATAATGTGATACACGACATAACCAGGGAGGAGTACGAATCAGTGTTGAATATAAATTCAACTTCAGACACACCGGTTAATGTGTTAGACGAACATTTTCTGAGCTTGGAAAGTGAAAAAACCAACGGAACCAACGTTGTGACACAAGAGCAGGATTTCAAAAGAAGGAAAACCACCGATTATGGCAACAATCGCACGGTCCCGTTTTCACATTTTCATCAATGCTGA 948 0.4451 MDFDLENPLGNFHDLPCDAVPSLFLIESDHIPPPNYCQSFKASDFDISVRRDVVSLISQLSCTFDPVLPYLAINYLDRFLAHQGILQPKPWANKLLAISCFSLAAKMLKTEYSATDVQVLMNHGDGGAIFEAQTIQRMEGIVLGALQWRMRSITPFSFIPFFVNLFRLKDPALRQVLKDGASEIILKSQREIKVLEFKPSTVAASALLYASHELFPFQYPCFLRAISDCSYINKETVVQCYNVIHDITREEYESVLNINSTSDTPVNVLDEHFLSLESEKTNGTNVVTQEQDFKRRKTTDYGNNRTVPFSHFHQC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1686 315 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Gso12g1686 315 SUPERFAMILY Cyclin-like 135 249 IPR036915 -
Gso12g1686 315 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 302 - -
Gso12g1686 315 Gene3D - 23 242 - -
Gso12g1686 315 CDD CYCLIN 50 143 IPR013763 -
Gso12g1686 315 Pfam Cyclin, N-terminal domain 28 150 IPR006671 -
Gso12g1686 315 Gene3D - 33 151 - -
Gso12g1686 315 PANTHER CYCLINS 5 302 IPR039361 -
Gso12g1686 315 SMART cyclin_7 157 246 IPR013763 -
Gso12g1686 315 SMART cyclin_7 51 144 IPR013763 -
Gso12g1686 315 CDD CYCLIN 153 245 IPR013763 -
Gso12g1686 315 Pfam Cyclin, C-terminal domain 153 251 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1686 Gso-Chr12 40490228 40492842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1686 1 299 Core Cell Cycle Gene Families AT4G03270 45.367 3.31e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1686 K18812 - gmx:100811659 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1686 12 40490228 40492842 Gso11g3182 11 47598616 47601247 GST
Gso12g1686 12 40490228 40492842 Gso12g0868 12 9663463 9666207 PCT
Gso12g1686 12 40490228 40492842 Gso6g2463 6 46300764 46303297 PCT
Gso12g0868 12 9663463 9666207 Gso12g1686 12 40490228 40492842 PCT
Gso6g2463 6 46300764 46303297 Gso12g1686 12 40490228 40492842 PCT