Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1685 ATGAGAACTCCATCTTCCTCTCACAAAAGTGGACTTAACAAAGGCACTTGGACTCCAGAGGAAGATGCCAAGTTAATAGCTTATATCACTCGTTATGGCTCTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGACTGGCAAGGTGTGGAAAGAGCTGCAGGCTTAGGTGGCTAAATTATCTCAGGCCCAACATAAAAAGAGGGAACTATACTAAAGAAGAAGAAGAGATTATAATCAGACTGCACGAAAAGCTGGGTAACAAATGGTCTGTGATTGCCACTCATTTACCCGGAAGAACAGATAACGAAATAAAGAACCACTGGCACACCACTCTCAAAAAGCGTTTTGGAAAGAACACAGTTCACCCCAATAAAAAAATGAAAGCCACAAAATCAAATAGTTCTGGATCCAAGCAAATTCAGAACGTTGGTTTCTTTCACAGTAGTTCTACAATAACAACTTCTGAAACCTCTGATTCTGTCCCTTTGTCCCCAAGAGAATTCTCGTCCACAACCTCGGACTATACCACAGTTGTCACTAACGAAAATTTCTTACTGGAAGACGGGTTCGATTTTCTAGAAGCATGCTTAGAGGACGTGAACGAGAATATTTGGACAGAGACAAATGCAGCTAGCATTTCCAATTCCAAGACCCCAATGCTAGATAATGGTAATGGTAGTAATTTTCATGGTTCAGATGCTGCAGGGCCCATCATGGAATATAACGAAAATTTGGTTCTGGAGAATGATGAATTTGCGTTTCTAGAAGCATTGCAGCCAACAGTAACAACTGAGAATTTTTTGACAGACATGTCCCTTGTTCCAAACGAATTACTTGCCCCTTTGGTGAACGAATCTGAGGAATACTTTTCTTCCTTGTACGATGTGGACCTTTGGTGTCCCAGTAATTTCCATGATTTGCACGTGGGCTTATTGCAATGA 942 0.4151 MRTPSSSHKSGLNKGTWTPEEDAKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTKEEEEIIIRLHEKLGNKWSVIATHLPGRTDNEIKNHWHTTLKKRFGKNTVHPNKKMKATKSNSSGSKQIQNVGFFHSSSTITTSETSDSVPLSPREFSSTTSDYTTVVTNENFLLEDGFDFLEACLEDVNENIWTETNAASISNSKTPMLDNGNGSNFHGSDAAGPIMEYNENLVLENDEFAFLEALQPTVTTENFLTDMSLVPNELLAPLVNESEEYFSSLYDVDLWCPSNFHDLHVGLLQ* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1685 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso12g1685 313 CDD SANT 69 112 IPR001005 -
Gso12g1685 313 CDD SANT 16 61 IPR001005 -
Gso12g1685 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso12g1685 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Gso12g1685 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso12g1685 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso12g1685 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso12g1685 313 Gene3D - 68 143 - -
Gso12g1685 313 SMART sant 66 114 IPR001005 -
Gso12g1685 313 SMART sant 13 63 IPR001005 -
Gso12g1685 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso12g1685 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso12g1685 313 Gene3D - 6 67 - -
Gso12g1685 313 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1685 Gso-Chr12 40478986 40480863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1685 2 159 MYB Transcription Factor Family AT2G31180 53.988 3.31e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g1685 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1685 K09422 - gmx:100811124 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1685 12 40478986 40480863 Gso6g2465 6 46332217 46334135 PCT
Gso12g0861 12 9515271 9516720 Gso12g1685 12 40478986 40480863 PCT
Gso6g2466 6 46342749 46344256 Gso12g1685 12 40478986 40480863 PCT